Updating with fixes to epiworld #37
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apulsipher
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Nov 25, 2024
* Clean up README.md * Adding an example using globalevent_fun * Create simulation function for LFMCMC with ability to set parameters * Add update for transmission rate based on season * Remove contact_rate_holiday and clean up code * Update gitignore * Add lfmcmc_summary_fun to forecast * Add prop and kern function and run lfmcmc * Updating proposal function * Update Dockerfile to install epiworldR from github instead of CRAN * Extract season start dates separate from sim fun and move model out of sim fun * Use today(model) instead of a global current_model_day * Clean up index.qmd, update prop and kernal functions, add commit SHA to Dockerfile epiworldR install * Fix bug with sim fun output type * Updating with fixes to epiworld (#37) * Updating with fixes to epiworld * Update epiworldR commit tag in Dockerfile --------- Co-authored-by: Andrew Pulsipher <[email protected]> --------- Co-authored-by: George G. Vega Yon <[email protected]>
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This is part of a larger set of updates (sorry, @apulsipher!). For this branch to work, we first need to merge UofUEpiBio/epiworld#34 and UofUEpiBio/epiworldR#52. We probably want to make a new release of epiworld C++ after the merge.