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BatchConvert
BatchConvert PublicA nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
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OME_Zarr_Tools
OME_Zarr_Tools PublicCourse materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023
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image_processing
image_processing PublicForked from bugraoezdemir/image_processing
A repo with several common tools for 3D image processing
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Rclone-BIA
Rclone-BIA PublicScripts to facilitate exchange of data between local filesystems and BioImage Archive
Repositories
- zarr_parallel_processing Public Forked from fmi-basel/zarr_parallel_processing
Scratch repo for the OME-NGFF hackathon
Euro-BioImaging/zarr_parallel_processing’s past year of commit activity - BatchConvert Public
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
Euro-BioImaging/BatchConvert’s past year of commit activity - ome_zarr_pyramid Public
Euro-BioImaging/ome_zarr_pyramid’s past year of commit activity - convert_and_concatenate Public
Euro-BioImaging/convert_and_concatenate’s past year of commit activity - image_processing Public Forked from bugraoezdemir/image_processing
A repo with several common tools for 3D image processing
Euro-BioImaging/image_processing’s past year of commit activity