Simulate sets of target and neighbor DNA sequences under a coalescent
model with defined markers in the targets. By default, the markers are
deleted in the neighbors, but alternatively they can be mutated with a
higher rate than the background in the targets. Markers can then be
extracted by programs for neighbor-based marker discovery, for example
fur. The package contains two
programs, stan to simulate targets and neighbors, and rad to
randomly delete regions from sequences.
Bernhard Haubold, [email protected]
Setup the environment by running the script
setup.sh, and construct the binaries.
bash scripts/setup.sh
make
The directory bin now contains the binaries rad and stan.