Update notebooks for cloud environments #170
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| name: "Update notebooks for cloud environments" | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| - "!gh-pages" | |
| - "!open-in-colab" | |
| - "!open-in-kaggle" | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: "0 4 * * MON" | |
| workflow_dispatch: | |
| inputs: | |
| branch: | |
| description: "Branch on FEMlium repository" | |
| type: string | |
| jobs: | |
| open_in_colab: | |
| strategy: | |
| matrix: | |
| include: | |
| - backend: none | |
| fem_on_colab_packages: | | |
| gmsh@current | |
| notebook_pattern: | | |
| "**/generate_mesh*.ipynb" | |
| "**/tutorial_*_meshio.ipynb" | |
| - backend: dolfin | |
| fem_on_colab_packages: | | |
| fenics==real@current$dolfin | |
| notebook_pattern: | | |
| "**/tutorial_*_dolfin.ipynb" | |
| - backend: dolfinx | |
| fem_on_colab_packages: | | |
| gmsh@current%dolfinx.io | |
| fenicsx==real@current$dolfinx | |
| notebook_pattern: | | |
| "**/tutorial_*_dolfinx.ipynb" | |
| - backend: firedrake | |
| fem_on_colab_packages: | | |
| firedrake==real@current | |
| notebook_pattern: | | |
| "**/tutorial_*_firedrake.ipynb" | |
| fail-fast: false | |
| uses: fem-on-colab/open-in-colab-workflow/.github/workflows/workflow_call.yml@main | |
| with: | |
| work_directory: open_in_colab | |
| notebook_pattern: ${{ matrix.notebook_pattern }} | |
| notebook_preparation: | | |
| git clone https://github.com/FEMlium/FEMlium.git | |
| cd FEMlium | |
| if [ -n "${{ (inputs || github.event.inputs).branch }}" ]; then | |
| git checkout "${{ (inputs || github.event.inputs).branch }}" | |
| fi | |
| NOTEBOOKS_TO_INCLUDE="" | |
| while read -r PATTERN; do | |
| NOTEBOOKS_TO_INCLUDE="${NOTEBOOKS_TO_INCLUDE} --include=$(echo ${PATTERN} | sed 's|\"||g')" | |
| done <<< $(printf "%s" "${{ matrix.notebook_pattern }}") | |
| rsync -avz --delete --include "*/" ${NOTEBOOKS_TO_INCLUDE} --exclude="*" tutorials ../open_in_colab/ | |
| fem_on_colab_packages: ${{ matrix.fem_on_colab_packages }} | |
| pip_packages: | | |
| meshio | |
| viskex@https://github.com/viskex/viskex.git@current | |
| FEMlium@https://github.com/FEMlium/FEMlium.git@current$femlium | |
| test_script: | | |
| apt install -y -qq xvfb | |
| export DISPLAY=":99" | |
| Xvfb $DISPLAY -screen 0 1024x768x24 > /dev/null 2>&1 & | |
| NOTEBOOKS_TO_TEST="" | |
| while read -r PATTERN; do | |
| NOTEBOOKS_TO_TEST="${NOTEBOOKS_TO_TEST} $(find open_in_colab -wholename $(echo ${PATTERN} | sed 's|\"||g'))" | |
| done <<< $(printf "%s" "${{ matrix.notebook_pattern }}") | |
| python3 -m pytest --nbval ${NOTEBOOKS_TO_TEST} | |
| publish_on: github@FEMlium/femlium.github.io@open-in-colab | |
| publish_if_repository: FEMlium/femlium.github.io | |
| open_in_kaggle: | |
| strategy: | |
| matrix: | |
| include: | |
| - backend: none | |
| fem_on_kaggle_packages: | | |
| gmsh@current | |
| notebook_pattern: | | |
| "**/generate_mesh*.ipynb" | |
| "**/tutorial_*_meshio.ipynb" | |
| - backend: dolfin | |
| fem_on_kaggle_packages: | | |
| fenics==real@current$dolfin | |
| notebook_pattern: | | |
| "**/tutorial_*_dolfin.ipynb" | |
| - backend: dolfinx | |
| fem_on_kaggle_packages: | | |
| gmsh@current%dolfinx.io | |
| fenicsx==real@current$dolfinx | |
| notebook_pattern: | | |
| "**/tutorial_*_dolfinx.ipynb" | |
| - backend: firedrake | |
| fem_on_kaggle_packages: | | |
| firedrake==real@current | |
| notebook_pattern: | | |
| "**/tutorial_*_firedrake.ipynb" | |
| fail-fast: false | |
| uses: fem-on-kaggle/open-in-kaggle-workflow/.github/workflows/workflow_call.yml@main | |
| with: | |
| work_directory: open_in_kaggle | |
| notebook_pattern: ${{ matrix.notebook_pattern }} | |
| notebook_preparation: | | |
| git clone https://github.com/FEMlium/FEMlium.git | |
| cd FEMlium | |
| if [ -n "${{ (inputs || github.event.inputs).branch }}" ]; then | |
| git checkout "${{ (inputs || github.event.inputs).branch }}" | |
| fi | |
| NOTEBOOKS_TO_INCLUDE="" | |
| while read -r PATTERN; do | |
| NOTEBOOKS_TO_INCLUDE="${NOTEBOOKS_TO_INCLUDE} --include=$(echo ${PATTERN} | sed 's|\"||g')" | |
| done <<< $(printf "%s" "${{ matrix.notebook_pattern }}") | |
| rsync -avz --delete --include "*/" ${NOTEBOOKS_TO_INCLUDE} --exclude="*" tutorials ../open_in_kaggle/ | |
| fem_on_kaggle_packages: ${{ matrix.fem_on_kaggle_packages }} | |
| pip_packages: | | |
| meshio | |
| viskex@https://github.com/viskex/viskex.git@current | |
| FEMlium@https://github.com/FEMlium/FEMlium.git@current$femlium | |
| test_script: | | |
| apt install -y -qq xvfb | |
| export DISPLAY=":99" | |
| Xvfb $DISPLAY -screen 0 1024x768x24 > /dev/null 2>&1 & | |
| NOTEBOOKS_TO_TEST="" | |
| while read -r PATTERN; do | |
| NOTEBOOKS_TO_TEST="${NOTEBOOKS_TO_TEST} $(find open_in_kaggle -wholename $(echo ${PATTERN} | sed 's|\"||g'))" | |
| done <<< $(printf "%s" "${{ matrix.notebook_pattern }}") | |
| python3 -m pytest --nbval ${NOTEBOOKS_TO_TEST} | |
| publish_on: github@FEMlium/femlium.github.io@open-in-kaggle | |
| publish_if_repository: FEMlium/femlium.github.io | |
| warn: | |
| runs-on: ubuntu-latest | |
| if: github.repository == 'FEMlium/femlium.github.io' && github.ref == 'refs/heads/main' && github.event_name == 'schedule' | |
| steps: | |
| - name: Warn if scheduled workflow is about to be disabled | |
| uses: fem-on-colab/warn-workflow-about-to-be-disabled-action@main | |
| with: | |
| workflow-filename: open_in_cloud.yml | |
| days-elapsed: 50 |