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[pre-commit.ci] pre-commit autoupdate #391

GitHub Actions / Test report Unit Jammy failed Jun 10, 2024 in 0s

18127 tests run, 18085 passed, 0 skipped, 42 failed.

Annotations

Check failure on line 1 in test_lon_lat_height_2_cartesian

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_lon_lat_height_2_cartesian. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55cbfb6ec510): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55cbfb6a7830): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55cbfba9bb20): Algorithm vtkXMLUnstructuredGridReader(0x55cbfb6a7830) returned failure for request: vtkInformation (0x55cbfb974f60)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  FORWARD_DIRECTION: 0
  ALGORITHM_AFTER_FORWARD: 1



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_lon_lat_height_2_cartesian on a  named cc829c311df3 by Unknown Tue Jun 11 00:52:46 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_node_lies_on_boundary

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_node_lies_on_boundary. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55723c4a4510): Error parsing XML in stream at line 22, column 9, byte index 1009: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55723c45f830): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55723c849d40): Algorithm vtkXMLUnstructuredGridReader(0x55723c45f830) returned failure for request: vtkInformation (0x55723c734f80)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_node_lies_on_boundary on a  named cc829c311df3 by Unknown Tue Jun 11 00:52:47 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_spherical_polar_2_cartesian_field

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_spherical_polar_2_cartesian_field. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55a1efa68520): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55a1efa23840): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55a1efe0cb60): Algorithm vtkXMLUnstructuredGridReader(0x55a1efa23840) returned failure for request: vtkInformation (0x55a1efcf8f90)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_spherical_polar_2_cartesian_field on a  named cc829c311df3 by Unknown Tue Jun 11 00:52:48 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_vector_spherical_polar_2_cartesian_field

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_vector_spherical_polar_2_cartesian_field. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55937513b520): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x5593750f6840): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x5593754dfb60): Algorithm vtkXMLUnstructuredGridReader(0x5593750f6840) returned failure for request: vtkInformation (0x5593753cbf90)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_vector_spherical_polar_2_cartesian_field on a  named cc829c311df3 by Unknown Tue Jun 11 00:52:49 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_temperature_goal

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_temperature_goal. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55b4472ce200): Error parsing XML in stream at line 35, column 0, byte index 2588: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55b4472c32f0): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55b4472db430): Algorithm vtkXMLUnstructuredGridReader(0x55b4472c32f0) returned failure for request: vtkInformation (0x55b4472e1540)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_temperature_goal on a  named cc829c311df3 by Unknown Tue Jun 11 00:52:53 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_vector_cartesian_2_lon_lat_height_c

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_vector_cartesian_2_lon_lat_height_c. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x561ee97c0500): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x561ee977b820): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x561ee9b64b40): Algorithm vtkXMLUnstructuredGridReader(0x561ee977b820) returned failure for request: vtkInformation (0x561ee9a50f70)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_vector_cartesian_2_lon_lat_height_c on a  named cc829c311df3 by Unknown Tue Jun 11 00:52:56 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_spherical_polar_2_lon_lat_height

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_spherical_polar_2_lon_lat_height. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x5594b58f2510): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x5594b58ad830): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x5594b5c96b50): Algorithm vtkXMLUnstructuredGridReader(0x5594b58ad830) returned failure for request: vtkInformation (0x5594b5b82f80)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  FORWARD_DIRECTION: 0
  ALGORITHM_AFTER_FORWARD: 1



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_spherical_polar_2_lon_lat_height on a  named cc829c311df3 by Unknown Tue Jun 11 00:52:57 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_bound_metric_isotropic

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_bound_metric_isotropic. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x5582a45544f0): Error parsing XML in stream at line 22, column 0, byte index 1000: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x5582a4549330): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x5582a4561740): Algorithm vtkXMLUnstructuredGridReader(0x5582a4549330) returned failure for request: vtkInformation (0x5582a4567850)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_bound_metric_isotropic on a  named cc829c311df3 by Unknown Tue Jun 11 00:52:58 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_vector_lon_lat_height_2_cartesian

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_vector_lon_lat_height_2_cartesian. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x559dde3e5510): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x559dde3a0830): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x559dde789b50): Algorithm vtkXMLUnstructuredGridReader(0x559dde3a0830) returned failure for request: vtkInformation (0x559dde675f80)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  FORWARD_DIRECTION: 0
  ALGORITHM_AFTER_FORWARD: 1



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_vector_lon_lat_height_2_cartesian on a  named cc829c311df3 by Unknown Tue Jun 11 00:52:58 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_cartesian_2_spherical_polar_field

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_cartesian_2_spherical_polar_field. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x563d10e03510): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x563d10dbe830): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x563d111a7b50): Algorithm vtkXMLUnstructuredGridReader(0x563d10dbe830) returned failure for request: vtkInformation (0x563d11093f80)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_cartesian_2_spherical_polar_field on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:00 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_differentiate_field_discontinuous

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_differentiate_field_discontinuous. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x561bdd335510): Error parsing XML in stream at line 22, column 26, byte index 1026: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x561bdd2f0830): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x561bdd6d9b50): Algorithm vtkXMLUnstructuredGridReader(0x561bdd2f0830) returned failure for request: vtkInformation (0x561bdd5c5f80)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_differentiate_field_discontinuous on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:01 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_linear_interpolation

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_linear_interpolation. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55b589c6e4b0): Error parsing XML in stream at line 22, column 10, byte index 1010: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55b589e1e4c0): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55b589e1eb20): Algorithm vtkXMLUnstructuredGridReader(0x55b589e1e4c0) returned failure for request: vtkInformation (0x55b589e28100)
  Debug: Off
  Modified Time: 700
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
 For vtu filename: data/cube-itv5.vtu
*** ERROR ***
Error message: vtu not found
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 16.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_form_metric

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_form_metric. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x556631ae9200): Error parsing XML in stream at line 22, column 26, byte index 1026: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x556631ade2f0): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x556631af6420): Algorithm vtkXMLUnstructuredGridReader(0x556631ade2f0) returned failure for request: vtkInformation (0x556631afc530)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_form_metric on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:05 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_vector_spherical_polar_2_cartesian

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_vector_spherical_polar_2_cartesian. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x56325951f520): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x5632594da840): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x5632598c3b60): Algorithm vtkXMLUnstructuredGridReader(0x5632594da840) returned failure for request: vtkInformation (0x5632597aff90)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_vector_spherical_polar_2_cartesian on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:06 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_make_sparsity

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_make_sparsity. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55b86f97f500): Error parsing XML in stream at line 22, column 33, byte index 979: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55b86f93a820): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55b86fd24de0): Algorithm vtkXMLUnstructuredGridReader(0x55b86f93a820) returned failure for request: vtkInformation (0x55b86fc10020)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_make_sparsity on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:13 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_cartesian_2_spherical_polar

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_cartesian_2_spherical_polar. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x5616783f1520): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x5616783ac840): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x561678796d50): Algorithm vtkXMLUnstructuredGridReader(0x5616783ac840) returned failure for request: vtkInformation (0x5616783ae7a0)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_cartesian_2_spherical_polar on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:21 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_scalar_field_view

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_scalar_field_view. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x561857a25500): Error parsing XML in stream at line 22, column 9, byte index 1009: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x5618579e0820): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x561857dcade0): Algorithm vtkXMLUnstructuredGridReader(0x5618579e0820) returned failure for request: vtkInformation (0x561857cb5f90)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  FORWARD_DIRECTION: 0
  ALGORITHM_AFTER_FORWARD: 1



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_scalar_field_view on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:26 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_pseudo_supermesh

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_pseudo_supermesh. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x5604f2aef4e0): Error parsing XML in stream at line 24, column 11, byte index 1254: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x5604f2ae41d0): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x5604f2afc730): Algorithm vtkXMLUnstructuredGridReader(0x5604f2ae41d0) returned failure for request: vtkInformation (0x5604f2b02840)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_pseudo_supermesh on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:28 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_vector_cartesian_2_spherical_polar

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_vector_cartesian_2_spherical_polar. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55fb19ea1520): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55fb19e5c840): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55fb1a245b60): Algorithm vtkXMLUnstructuredGridReader(0x55fb19e5c840) returned failure for request: vtkInformation (0x55fb19e5e7a0)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  FORWARD_DIRECTION: 0
  ALGORITHM_AFTER_FORWARD: 1



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_vector_cartesian_2_spherical_polar on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:31 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_adapt_state_unittest

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_adapt_state_unittest. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55ac175b0aa0): Error parsing XML in stream at line 22, column 9, byte index 1009: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55ac1756bdc0): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55ac17956210): Algorithm vtkXMLUnstructuredGridReader(0x55ac1756bdc0) returned failure for request: vtkInformation (0x55ac178413c0)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  FORWARD_DIRECTION: 0
  ALGORITHM_AFTER_FORWARD: 1



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_adapt_state_unittest on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:31 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_cylinder_hessian

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_cylinder_hessian. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55f0339f04d0): Error parsing XML in stream at line 22, column 45, byte index 989: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55f0339ab7f0): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55f033d95d00): Algorithm vtkXMLUnstructuredGridReader(0x55f0339ab7f0) returned failure for request: vtkInformation (0x55f033c80eb0)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_cylinder_hessian on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:32 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_potential_vorticity

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_potential_vorticity. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55894c157510): Error parsing XML in stream at line 22, column 10, byte index 1010: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55894c112830): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55894c4fcd40): Algorithm vtkXMLUnstructuredGridReader(0x55894c112830) returned failure for request: vtkInformation (0x55894c3e7ef0)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  FORWARD_DIRECTION: 0
  ALGORITHM_AFTER_FORWARD: 1



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_potential_vorticity on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:37 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_adapt_state_3d

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_adapt_state_3d. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x56199f548a30): Error parsing XML in stream at line 22, column 9, byte index 1009: not well-formed (invalid token)

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x56199f503d50): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x56199f8ee4c0): Algorithm vtkXMLUnstructuredGridReader(0x56199f503d50) returned failure for request: vtkInformation (0x56199f920e30)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_adapt_state_3d on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:37 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_lon_lat_height_2_spherical_polar

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_lon_lat_height_2_spherical_polar. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55eb34a7a510): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55eb34a35830): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55eb34e1eb50): Algorithm vtkXMLUnstructuredGridReader(0x55eb34a35830) returned failure for request: vtkInformation (0x55eb34a37790)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  FORWARD_DIRECTION: 0
  ALGORITHM_AFTER_FORWARD: 1



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_lon_lat_height_2_spherical_polar on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:37 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

Check failure on line 1 in test_spherical_polar_2_cartesian

See this annotation in the file changed.

@github-actions github-actions / Test report Unit Jammy

test_spherical_polar_2_cartesian. 

ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x55bcaeb68510): Error parsing XML in stream at line 37, column 0, byte index 4434: junk after document element

ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x55bcaeb23830): Error parsing input file.  ReadXMLInformation aborting.

ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x55bcaef0dd40): Algorithm vtkXMLUnstructuredGridReader(0x55bcaeb23830) returned failure for request: vtkInformation (0x55bcaeb25790)
  Debug: Off
  Modified Time: 83
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_INFORMATION
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0



ERROR: Something went wrong (got no nodes) - aborting
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 8 FPE: Floating Point Exception,probably divide by zero
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind
[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.15.5, Sep 29, 2021 
[0]PETSC ERROR: ./test_spherical_polar_2_cartesian on a  named cc829c311df3 by Unknown Tue Jun 11 00:53:40 2024
[0]PETSC ERROR: Configure options --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-tFq6Xk/petsc-3.15.5+dfsg1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -fPIC" MAKEFLAGS=w
[0]PETSC ERROR: #1 User provided function() at unknown file:0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
View more details on GitHub Actions