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[Feature] Guarding against unimplemented configuration #40

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FlorianDeconinck
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Guarding against unimplemented namelists options:

  • a2b_ord4
  • d_sw
  • fv_dynamics
  • fv_subgridz
  • neg_adj3
  • divergence damping
  • xppm
  • yppm

Misc:

  • Fix netcdf_monitor not mkdir the directory
  • Add as_dict to the dycore state to dump the dycore more easily

pchakraborty and others added 30 commits January 26, 2023 20:47
2. Made GEOS specific changes to thresholds in saturation adjustment
Parametrize tool with backend, output format
Add saturation adjustement threshold to const
Fix bad merge for bdt with GEOS_Wrapper
FlorianDeconinck and others added 27 commits August 15, 2023 16:45
* Verbose choice of block/grid size

* added build script for c5

* updated repo to NOAA

* GEOS integration (#9)

* Initialize GeosDycoreWrapper with bdt (timestep)

* Use GEOS version of constants

* 1. Add qcld to the list of tracers beings advected
2. Made GEOS specific changes to thresholds in saturation adjustment

* Accumulate diss_est

* Allow GEOS_WRAPPER to process device data

* Add clear to collector for 3rd party use. GEOS pass down timings to caller

* Make kernel analysis run a copy stencil to compute local bandwith
Parametrize tool with backend, output format

* Move constant on a env var
Add saturation adjustement threshold to const

* Remove unused if leading to empty code block

* Restrict dace to 0.14.1 due to a parsing bug

* Add guard for bdt==0
Fix bad merge for bdt with GEOS_Wrapper

* Remove unused code

* Fix theroritical timings

* Fixed a bug where pkz was being calculated twice, and the second calc was wrong

* Downgrade DaCe to 0.14.0 pending array aliasing fix

* Set default cache path for orchestrated DaCe to respect GT_CACHE_* env

* Remove previous per stencil override of default_build_folder

* Revert "Set default cache path for orchestrated DaCe to respect GT_CACHE_* env"

* Revert "Remove previous per stencil override of default_build_folder"

* Read cache_root in default dace backend

* Document faulty behavior with GT_CACHE_DIR_NAME

* Fix bad requirements syntax

* Check for the string value of CONST_VERSION directly instead of enum

* Protect constant selection more rigorusly.
Clean abort on unknown constant given

* Log constants selection

* Refactor NQ to constants.py

* Fix or explain inlined import

* Verbose runtime error when bad dt_atmos

* Verbose warm up

* re-initialize heat_source and diss_est each call, add do_skeb check to accumulation

---------

Co-authored-by: Purnendu Chakraborty <[email protected]>
Co-authored-by: Oliver Elbert <[email protected]>

---------

Co-authored-by: Rusty Benson <[email protected]>
Co-authored-by: Oliver Elbert <[email protected]>
Co-authored-by: Purnendu Chakraborty <[email protected]>
Co-authored-by: Oliver Elbert <[email protected]>
* Feature/dp driver (#13)

* initial commit

* adding test config

* adding the rest of driver and util code

* updating history.md

* move u_max to dycore config

* uncomment assert

* added comment explaining the copy of grid type to dycore config

* Turn main unit test  & lint on PR, logger clean up [NASA:Update]  (#15)

* Initialize GeosDycoreWrapper with bdt (timestep)

* Use GEOS version of constants

* 1. Add qcld to the list of tracers beings advected
2. Made GEOS specific changes to thresholds in saturation adjustment

* Accumulate diss_est

* Allow GEOS_WRAPPER to process device data

* Add clear to collector for 3rd party use. GEOS pass down timings to caller

* Make kernel analysis run a copy stencil to compute local bandwith
Parametrize tool with backend, output format

* Move constant on a env var
Add saturation adjustement threshold to const

* Restrict dace to 0.14.1 due to a parsing bug

* Add guard for bdt==0

* Fix theroritical timings

* Fixed a bug where pkz was being calculated twice, and the second calc was wrong

* Downgrade DaCe to 0.14.0 pending array aliasing fix

* Set default cache path for orchestrated DaCe to respect GT_CACHE_* env

* Remove previous per stencil override of default_build_folder

* Revert "Set default cache path for orchestrated DaCe to respect GT_CACHE_* env"

* Read cache_root in default dace backend

* Document faulty behavior with GT_CACHE_DIR_NAME

* Check for the string value of CONST_VERSION directly instead of enum

* Protect constant selection more rigorusly.
Clean abort on unknown constant given

* Log constants selection

* Refactor NQ to constants.py

* Introduce PACE_LOGLEVEL to control log level from outside

* Code guidelines clean up

* Devops/GitHub actions on (#15)

* Linting on PR

* Run main unit test

* Update python to available 3.8.12

* Fix unit tests (remove dxa, dya rely on halo ex)

* Update HISTORY.md

* Adapt log_level in driver.run

* Verbose the PACE_CONSTANTS

* Doc log level hierarchical nature

---------

Co-authored-by: Purnendu Chakraborty <[email protected]>
Co-authored-by: Purnendu Chakraborty <[email protected]>

* Lint

---------

Co-authored-by: Oliver Elbert <[email protected]>
Co-authored-by: Purnendu Chakraborty <[email protected]>
Co-authored-by: Purnendu Chakraborty <[email protected]>
* Update gt4py to top of master on June 21

* Update DaCe to 0.14.2
Workaround aliasing issue in FiniteVolumeTransport

* Fix to gt4py storage

* Downgrade to dace 0.14.1

* DaCe to 0.14.4
Orchestrating NonHydrostaticPressureGradient
Adptating code to newer gt4py

* Regenerate constraints.txt

* Default constants to GFS
Fix snapshot for GPU runs
Lint on ETA
Fix log level

* Remove `daint_venv` submodule

* Adding dace as a submodule
Removing buildenv as a submodule

* Update gt4py to latest master

* Skip ConstantPropagation during `Simplify`

* Remove buidlenv

* Update requirements_dev.txt

* Add editable util to requirements_dev.txt

* lint

* scipy for tests is now needed

* Pin `DaCe` to pace-fixes-0 merge

* Remove logging setup in test_translate

* Make cupy import robust to device not being available

* Fix to GEOS bridge MPS detection

* Up gt4py to August 14th EOD:
  - Hip/ROCm
  - New allocators
* Stencil build override for GEOS

* Deactivate warnings if PACE_LOGLEVEL is > WARNING

* Better log level
* Initialize GeosDycoreWrapper with bdt (timestep)

* Use GEOS version of constants

* 1. Add qcld to the list of tracers beings advected
2. Made GEOS specific changes to thresholds in saturation adjustment

* Accumulate diss_est

* Allow GEOS_WRAPPER to process device data

* Add clear to collector for 3rd party use. GEOS pass down timings to caller

* Make kernel analysis run a copy stencil to compute local bandwith
Parametrize tool with backend, output format

* Move constant on a env var
Add saturation adjustement threshold to const

* lint

* More linting

* Remove unused if leading to empty code block

* Restrict dace to 0.14.1 due to a parsing bug

* Add guard for bdt==0
Fix bad merge for bdt with GEOS_Wrapper

* Remove unused code

* Fix theroritical timings
Lint

* Fixed a bug where pkz was being calculated twice, and the second calc was wrong

* Downgrade DaCe to 0.14.0 pending array aliasing fix

* Set default cache path for orchestrated DaCe to respect GT_CACHE_* env

* Remove previous per stencil override of default_build_folder

* Revert "Set default cache path for orchestrated DaCe to respect GT_CACHE_* env"

This reverts commit 4fc5b4d.

* Revert "Remove previous per stencil override of default_build_folder"

This reverts commit 2245027.

* Read cache_root in default dace backend

* Document faulty behavior with GT_CACHE_DIR_NAME

* Fix bad requirements syntax

* Check for the string value of CONST_VERSION directly instead of enum

* Protect constant selection more rigorusly.
Clean abort on unknown constant given

* Log constants selection

* Refactor NQ to constants.py

* Replace all logger with pace_log
Introduce PACE_LOGLEVEL to control log level from outside

* Code guidelines clean up

* Devops/GitHub actions on (#15)

* Linting on PR

* Run main unit test

* Update python to available 3.8.12

* Remove cd to pace

* Lint: git submodule recursive

* Typo

* Add openmpi to the image

* Linting

* Fix unit tests (remove dxa, dya rely on halo ex)

* typo

* Change name of jobs

* Distributed compilation on orchestrated backend for NxN layouts (#14)

* Adapt orchestration distribute compile for NxN layout

* Remove debug code

* Add a more descriptive string base postfix for cache naming
Identify the code path for all cases
Consistent reload post-compile
Create a central space for all caches generation logic
No more original layout check required

* Add a test on caches relocatability

* Verbose todo

* Linting on PR

* Run main unit test

* Update python to available 3.8.12

* Remove cd to pace

* Lint: git submodule recursive

* Typo

* Add openmpi to the image

* Linting

* Fix unit tests (remove dxa, dya rely on halo ex)

* typo

* Change name of jobs

* Missing enum

* Lint imports

* Fix unit tests

* Deactivate relocability test due to Python crash
Logged as issyue 16

* Typo

* Raise for 1,X and X,1 layouts which requires a new descriptor

* Added ak, bk for 137 levels in eta.py

* Add floating point precision to GEOS bridge init

* lint

* Add device PCI bus id (for MPS debug)

* Typo + lint

* Try to detect MPS reading the "log" pipe

* Lint

* Clean up

* Log info GEOS bridge (#18)

* Add floating point precision to GEOS bridge init

* lint

* Add device PCI bus id (for MPS debug)

* Typo + lint

* Try to detect MPS reading the "log" pipe

* Lint

* Clean up

* Update geos/develop to grab NOAA PR9 results (#21)

* Verbose choice of block/grid size

* added build script for c5

* updated repo to NOAA

* GEOS integration (#9)

* Initialize GeosDycoreWrapper with bdt (timestep)

* Use GEOS version of constants

* 1. Add qcld to the list of tracers beings advected
2. Made GEOS specific changes to thresholds in saturation adjustment

* Accumulate diss_est

* Allow GEOS_WRAPPER to process device data

* Add clear to collector for 3rd party use. GEOS pass down timings to caller

* Make kernel analysis run a copy stencil to compute local bandwith
Parametrize tool with backend, output format

* Move constant on a env var
Add saturation adjustement threshold to const

* Remove unused if leading to empty code block

* Restrict dace to 0.14.1 due to a parsing bug

* Add guard for bdt==0
Fix bad merge for bdt with GEOS_Wrapper

* Remove unused code

* Fix theroritical timings

* Fixed a bug where pkz was being calculated twice, and the second calc was wrong

* Downgrade DaCe to 0.14.0 pending array aliasing fix

* Set default cache path for orchestrated DaCe to respect GT_CACHE_* env

* Remove previous per stencil override of default_build_folder

* Revert "Set default cache path for orchestrated DaCe to respect GT_CACHE_* env"

* Revert "Remove previous per stencil override of default_build_folder"

* Read cache_root in default dace backend

* Document faulty behavior with GT_CACHE_DIR_NAME

* Fix bad requirements syntax

* Check for the string value of CONST_VERSION directly instead of enum

* Protect constant selection more rigorusly.
Clean abort on unknown constant given

* Log constants selection

* Refactor NQ to constants.py

* Fix or explain inlined import

* Verbose runtime error when bad dt_atmos

* Verbose warm up

* re-initialize heat_source and diss_est each call, add do_skeb check to accumulation

---------




---------






* [NOAA:Update] Bring back #15 & doubly periodic domain (#25)

* Feature/dp driver (#13)

* initial commit

* adding test config

* adding the rest of driver and util code

* updating history.md

* move u_max to dycore config

* uncomment assert

* added comment explaining the copy of grid type to dycore config

* Turn main unit test  & lint on PR, logger clean up [NASA:Update]  (#15)

* Initialize GeosDycoreWrapper with bdt (timestep)

* Use GEOS version of constants

* 1. Add qcld to the list of tracers beings advected
2. Made GEOS specific changes to thresholds in saturation adjustment

* Accumulate diss_est

* Allow GEOS_WRAPPER to process device data

* Add clear to collector for 3rd party use. GEOS pass down timings to caller

* Make kernel analysis run a copy stencil to compute local bandwith
Parametrize tool with backend, output format

* Move constant on a env var
Add saturation adjustement threshold to const

* Restrict dace to 0.14.1 due to a parsing bug

* Add guard for bdt==0

* Fix theroritical timings

* Fixed a bug where pkz was being calculated twice, and the second calc was wrong

* Downgrade DaCe to 0.14.0 pending array aliasing fix

* Set default cache path for orchestrated DaCe to respect GT_CACHE_* env

* Remove previous per stencil override of default_build_folder

* Revert "Set default cache path for orchestrated DaCe to respect GT_CACHE_* env"

* Read cache_root in default dace backend

* Document faulty behavior with GT_CACHE_DIR_NAME

* Check for the string value of CONST_VERSION directly instead of enum

* Protect constant selection more rigorusly.
Clean abort on unknown constant given

* Log constants selection

* Refactor NQ to constants.py

* Introduce PACE_LOGLEVEL to control log level from outside

* Code guidelines clean up

* Devops/GitHub actions on (#15)

* Linting on PR

* Run main unit test

* Update python to available 3.8.12

* Fix unit tests (remove dxa, dya rely on halo ex)

* Update HISTORY.md

* Adapt log_level in driver.run

* Verbose the PACE_CONSTANTS

* Doc log level hierarchical nature

---------




* Lint

---------





* Update gt4py, dace, cleanup (#19)

* Update gt4py to top of master on June 21

* Update DaCe to 0.14.2
Workaround aliasing issue in FiniteVolumeTransport

* Fix to gt4py storage

* Downgrade to dace 0.14.1

* DaCe to 0.14.4
Orchestrating NonHydrostaticPressureGradient
Adptating code to newer gt4py

* Regenerate constraints.txt

* Default constants to GFS
Fix snapshot for GPU runs
Lint on ETA
Fix log level

* Remove `daint_venv` submodule

* Adding dace as a submodule
Removing buildenv as a submodule

* Update gt4py to latest master

* Skip ConstantPropagation during `Simplify`

* Remove buidlenv

* Update requirements_dev.txt

* Add editable util to requirements_dev.txt

* lint

* scipy for tests is now needed

* Pin `DaCe` to pace-fixes-0 merge

* Remove logging setup in test_translate

* Make cupy import robust to device not being available

* Fix to GEOS bridge MPS detection

* Up gt4py to August 14th EOD:
  - Hip/ROCm
  - New allocators

* DaCE module: swap SSH for HTTPS (#26)

* GEOS GridTools stencils build override (#27)

* Stencil build override for GEOS

* Deactivate warnings if PACE_LOGLEVEL is > WARNING

* Better log level

* Bad merge (again)

---------

Co-authored-by: Purnendu Chakraborty <[email protected]>
Co-authored-by: Purnendu Chakraborty <[email protected]>
Co-authored-by: Rusty Benson <[email protected]>
Co-authored-by: Oliver Elbert <[email protected]>
Co-authored-by: Oliver Elbert <[email protected]>
    Update dace to candidate 0.15.1
    Update gt4py to main branch as of 23/12/04 (d7cf10)
    Fixes to translate test to allow orchestrated one-rank regression test to pass
Minor adjustments to logging on orchestration build. Clean up.
- d_sw
- fv_dynamics
- fv_subgridz
- neg_adj3
Fix netcdf monitor not mkdir the directory
Add as_dict to the dycore state
Lint
- a2b_ord4
- d_sw
- divergence damping
- fv_dynamics
- xppm
- yppm
@FlorianDeconinck FlorianDeconinck merged commit d26a2b8 into up/feature/namelist_guarding Dec 29, 2023
4 checks passed
@FlorianDeconinck FlorianDeconinck deleted the feature/guarding_against_unimplemented_config branch December 29, 2023 19:13
FlorianDeconinck added a commit that referenced this pull request Jan 30, 2024
…OAA-GFDL#48)

* [Feature] Guarding against unimplemented configuration (#40)

Guarding against unimplemented namelists options:
- a2b_ord4
- d_sw
- fv_dynamics
- fv_subgridz
- neg_adj3
- divergence damping
- xppm
- yppm

Misc:
- Fix `netcdf_monitor` not mkdir the directory
- Add `as_dict` to the dycore state to dump the dycore more easily

* Unused assert

* Update fv3core/pace/fv3core/stencils/yppm.py

Co-authored-by: Oliver Elbert <[email protected]>

* Update fv3core/pace/fv3core/stencils/xppm.py

Co-authored-by: Oliver Elbert <[email protected]>

* Change NotImplemented to ValueError for n_sponge<3

* lint

---------

Co-authored-by: Oliver Elbert <[email protected]>
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2 participants