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  1. scATAC-reprog scATAC-reprog Public

    Forked from kundajelab/scATAC-reprog

    Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency" …

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    pipeline for analysis ss3xpress data

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  4. ABC-Enhancer-Gene-Prediction ABC-Enhancer-Gene-Prediction Public

    Forked from broadinstitute/ABC-Enhancer-Gene-Prediction

    Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

    Python

  5. GSEApy GSEApy Public

    Forked from zqfang/GSEApy

    Gene Set Enrichment Analysis in Python

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  6. ROGUE ROGUE Public

    Forked from PaulingLiu/ROGUE

    Assessing the purity of single cell population

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