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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,127 @@ | ||
| { | ||
| "metadata": { | ||
| "language_info": { | ||
| "codemirror_mode": { | ||
| "name": "ipython", | ||
| "version": 3 | ||
| }, | ||
| "file_extension": ".py", | ||
| "mimetype": "text/x-python", | ||
| "name": "python", | ||
| "nbconvert_exporter": "python", | ||
| "pygments_lexer": "ipython3", | ||
| "version": "3.8.12-final" | ||
| }, | ||
| "orig_nbformat": 2, | ||
| "kernelspec": { | ||
| "name": "python3", | ||
| "display_name": "Python 3.8.12 64-bit ('jbrowse-jupyter': conda)", | ||
| "metadata": { | ||
| "interpreter": { | ||
| "hash": "dc9fc419d624b95bc9cc0bd84733299ab39c72ed5f2a2912fba5b902d66850aa" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "nbformat": 4, | ||
| "nbformat_minor": 2, | ||
| "cells": [ | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": 1, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "from dash import html, Dash\n", | ||
| "from dash.dependencies import Input, Output\n", | ||
| "from dash import dcc\n", | ||
| "from jupyter_dash import JupyterDash\n", | ||
| "from jbrowse_jupyter import create, create_component" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": 2, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| " app = JupyterDash(__name__)\n", | ||
| " server = app.server" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": 3, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "locations = [\n", | ||
| " {\"value\": \"17:41,196,332..41,277,401\", \"label\": \"BRCA1\"\n", | ||
| " },\n", | ||
| " {\"value\": \"13:32,889,615..32,974,375\", \"label\": \"BRCA2\"},\n", | ||
| "]" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": 4, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "# Return the component with a specific location.\n", | ||
| "@app.callback(\n", | ||
| " Output(\"default-container\", \"children\"), Input(\"location-to-view\", \"value\")\n", | ||
| ")\n", | ||
| "def return_jbrowse(location):\n", | ||
| " print(location)\n", | ||
| " conf = create(\"view\", genome=\"hg19\")\n", | ||
| " conf.set_location(location)\n", | ||
| " return create_component(conf.get_config())" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": 5, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "\n", | ||
| "app.layout = html.Div(\n", | ||
| " [\n", | ||
| " html.P(\"Select a location to view.\"),\n", | ||
| " dcc.Dropdown(\n", | ||
| " id=\"location-to-view\", options=locations, value=\"1:1..90\"\n", | ||
| " ),\n", | ||
| " html.Hr(),\n", | ||
| " dcc.Loading(id=\"default-container\"),\n", | ||
| " ]\n", | ||
| ")" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": 6, | ||
| "metadata": {}, | ||
| "outputs": [ | ||
| { | ||
| "output_type": "display_data", | ||
| "data": { | ||
| "text/plain": "<IPython.lib.display.IFrame at 0x7f9d58f6db50>", | ||
| "text/html": "\n <iframe\n width=\"100%\"\n height=\"650\"\n src=\"http://127.0.0.1:3039/\"\n frameborder=\"0\"\n allowfullscreen\n \n ></iframe>\n " | ||
| }, | ||
| "metadata": {} | ||
| } | ||
| ], | ||
| "source": [ | ||
| "app.run_server(mode=\"inline\", use_reloader=False, debug=True, port=3039)" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [] | ||
| } | ||
| ] | ||
| } |