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@KatharinaHoff KatharinaHoff released this 20 Feb 18:10
· 477 commits to master since this release
v2.1.5
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Learn about vigilant mode.

Novel features of BRAKER in v2.1.5 (compared to 2.1.4):

  • integration of protein evidence from ProtHint with GeneMark-EP/EP+; this should now be the method of choice for running BRAKER with protein evidence since it does not require prior knowledge about how closely or distantly the proteins are to the target species

  • integration of protein evidence from ProtHint and RNA-Seq evidence from short read to genome alignment with GeneMark-ETP (development version); this feature will in the future continue to undergo improvement

  • novel output file braker.gtf that contains all transcript variants predicted by AUGUSTUS and GeneMark-EX

  • output of what-to-cite.txt that lists which publications should be cited depending on an individual BRAKER run

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