This repository has been archived by the owner on Dec 12, 2023. It is now read-only.

minor #94

	name: Python package

	on:
	push:
	branches: [ "main", "master" ]
	pull_request:
	branches: [ "main", "master" ]

	jobs:
	build:

	runs-on: ${{ matrix.os-version }}
	name: ${{ matrix.os-version }} (${{ matrix.python-version }})

	strategy:
	fail-fast: false
	matrix:
	os-version: ["ubuntu-latest"]
	python-version: ["3.9"] # ["3.8", "3.9", "3.10"]

	steps:
	- uses: actions/checkout@v3
	- name: "Set up Python ${{ matrix.python-version }}"
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip'
	- name: "Install flake8"
	run: \|
	pip install flake8
	- name: "Lint with flake8"
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: "Install miniconda"
	uses: conda-incubator/setup-miniconda@v2
	with:
	miniconda-version: "latest"
	auto-update-conda: true
	mamba-version: "*"
	python-version: ${{ matrix.python-version }}
	channels: conda-forge,bioconda
	environment-file: environment.yml
	- name: "Install pytest"
	shell: bash -l {0}
	run: \|
	pip install pytest
	- name: "Test with pytest"
	shell: bash -l {0}
	run: \|
	pytest -s

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