Add Github Page for Bioinformatics Workflows

docs/.editorconfig

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+# https://editorconfig.org
+root = true
+
+[*]
+charset = utf-8
+end_of_line = lf
+indent_size = 2
+indent_style = space
+insert_final_newline = true
+max_line_length = 80
+trim_trailing_whitespace = true
+
+[*.md]
+max_line_length = 0
+trim_trailing_whitespace = false
+
+[COMMIT_EDITMSG]
+max_line_length = 0

docs/.gitignore

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+_site
+.sass-cache
+.jekyll-cache
+*.gem
+.bundle
+vendor/bundle

docs/Dockerfile

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+ARG JEKYLL_BASEURL=''
+
+####################################
+
+FROM ruby:alpine as builder
+
+RUN apk add --no-cache make build-base
+RUN gem install bundler
+
+WORKDIR /jekyll
+ADD Gemfile Gemfile.lock ./
+RUN bundle install
+
+ADD . .
+ARG JEKYLL_BASEURL
+RUN bundle exec jekyll build --baseurl $JEKYLL_BASEURL
+
+####################################
+
+FROM nginx:alpine
+
+ARG JEKYLL_BASEURL
+COPY --from=builder /jekyll/_site /usr/share/nginx/html/$JEKYLL_BASEURL
+COPY nginx.conf /etc/nginx/nginx.conf
+
+EXPOSE 80

docs/Gemfile

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+source "https://rubygems.org"
+ruby RUBY_VERSION
+
+# gem "jekyll", "4.0"
+
+# to use GitHub Pages
+gem "github-pages", group: :jekyll_plugins
+
+# If you have any plugins, put them here!
+# group :jekyll_plugins do
+#    gem "jekyll-feed"
+#    gem "jekyll-sitemap"
+#    gem "jekyll-redirect-from"
+#    gem "jekyll-seo-tag"
+# end
+
+# Windows and JRuby does not include zoneinfo files, so bundle the tzinfo-data gem
+# and associated library.
+install_if -> { RUBY_PLATFORM =~ %r!mingw|mswin|java! } do
+  gem "tzinfo", "~> 1.2"
+  gem "tzinfo-data"
+end
+
+# Performance-booster for watching directories on Windows
+gem "wdm", "~> 0.1.1", :install_if => Gem.win_platform?

docs/Gemfile.lock

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+GEM
+  remote: https://rubygems.org/
+  specs:
+    activesupport (4.2.11.1)
+      i18n (~> 0.7)
+      minitest (~> 5.1)
+      thread_safe (~> 0.3, >= 0.3.4)
+      tzinfo (~> 1.1)
+    addressable (2.8.0)
+      public_suffix (>= 2.0.2, < 5.0)
+    coffee-script (2.4.1)
+      coffee-script-source
+      execjs
+    coffee-script-source (1.11.1)
+    colorator (1.1.0)
+    commonmarker (0.17.13)
+      ruby-enum (~> 0.5)
+    concurrent-ruby (1.1.5)
+    dnsruby (1.61.3)
+      addressable (~> 2.5)
+    em-websocket (0.5.1)
+      eventmachine (>= 0.12.9)
+      http_parser.rb (~> 0.6.0)
+    ethon (0.12.0)
+      ffi (>= 1.3.0)
+    eventmachine (1.2.7)
+    execjs (2.7.0)
+    faraday (0.17.0)
+      multipart-post (>= 1.2, < 3)
+    ffi (1.11.1)
+    forwardable-extended (2.6.0)
+    gemoji (3.0.1)
+    github-pages (202)
+      activesupport (= 4.2.11.1)
+      github-pages-health-check (= 1.16.1)
+      jekyll (= 3.8.5)
+      jekyll-avatar (= 0.6.0)
+      jekyll-coffeescript (= 1.1.1)
+      jekyll-commonmark-ghpages (= 0.1.6)
+      jekyll-default-layout (= 0.1.4)
+      jekyll-feed (= 0.11.0)
+      jekyll-gist (= 1.5.0)
+      jekyll-github-metadata (= 2.12.1)
+      jekyll-mentions (= 1.4.1)
+      jekyll-optional-front-matter (= 0.3.0)
+      jekyll-paginate (= 1.1.0)
+      jekyll-readme-index (= 0.2.0)
+      jekyll-redirect-from (= 0.14.0)
+      jekyll-relative-links (= 0.6.0)
+      jekyll-remote-theme (= 0.4.0)
+      jekyll-sass-converter (= 1.5.2)
+      jekyll-seo-tag (= 2.5.0)
+      jekyll-sitemap (= 1.2.0)
+      jekyll-swiss (= 0.4.0)
+      jekyll-theme-architect (= 0.1.1)
+      jekyll-theme-cayman (= 0.1.1)
+      jekyll-theme-dinky (= 0.1.1)
+      jekyll-theme-hacker (= 0.1.1)
+      jekyll-theme-leap-day (= 0.1.1)
+      jekyll-theme-merlot (= 0.1.1)
+      jekyll-theme-midnight (= 0.1.1)
+      jekyll-theme-minimal (= 0.1.1)
+      jekyll-theme-modernist (= 0.1.1)
+      jekyll-theme-primer (= 0.5.3)
+      jekyll-theme-slate (= 0.1.1)
+      jekyll-theme-tactile (= 0.1.1)
+      jekyll-theme-time-machine (= 0.1.1)
+      jekyll-titles-from-headings (= 0.5.1)
+      jemoji (= 0.10.2)
+      kramdown (= 1.17.0)
+      liquid (= 4.0.0)
+      listen (= 3.1.5)
+      mercenary (~> 0.3)
+      minima (= 2.5.0)
+      nokogiri (>= 1.10.4, < 2.0)
+      rouge (= 3.11.0)
+      terminal-table (~> 1.4)
+    github-pages-health-check (1.16.1)
+      addressable (~> 2.3)
+      dnsruby (~> 1.60)
+      octokit (~> 4.0)
+      public_suffix (~> 3.0)
+      typhoeus (~> 1.3)
+    html-pipeline (2.12.0)
+      activesupport (>= 2)
+      nokogiri (>= 1.4)
+    http_parser.rb (0.6.0)
+    i18n (0.9.5)
+      concurrent-ruby (~> 1.0)
+    jekyll (3.8.5)
+      addressable (~> 2.4)
+      colorator (~> 1.0)
+      em-websocket (~> 0.5)
+      i18n (~> 0.7)
+      jekyll-sass-converter (~> 1.0)
+      jekyll-watch (~> 2.0)
+      kramdown (~> 1.14)
+      liquid (~> 4.0)
+      mercenary (~> 0.3.3)
+      pathutil (~> 0.9)
+      rouge (>= 1.7, < 4)
+      safe_yaml (~> 1.0)
+    jekyll-avatar (0.6.0)
+      jekyll (~> 3.0)
+    jekyll-coffeescript (1.1.1)
+      coffee-script (~> 2.2)
+      coffee-script-source (~> 1.11.1)
+    jekyll-commonmark (1.3.1)
+      commonmarker (~> 0.14)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-commonmark-ghpages (0.1.6)
+      commonmarker (~> 0.17.6)
+      jekyll-commonmark (~> 1.2)
+      rouge (>= 2.0, < 4.0)
+    jekyll-default-layout (0.1.4)
+      jekyll (~> 3.0)
+    jekyll-feed (0.11.0)
+      jekyll (~> 3.3)
+    jekyll-gist (1.5.0)
+      octokit (~> 4.2)
+    jekyll-github-metadata (2.12.1)
+      jekyll (~> 3.4)
+      octokit (~> 4.0, != 4.4.0)
+    jekyll-mentions (1.4.1)
+      html-pipeline (~> 2.3)
+      jekyll (~> 3.0)
+    jekyll-optional-front-matter (0.3.0)
+      jekyll (~> 3.0)
+    jekyll-paginate (1.1.0)
+    jekyll-readme-index (0.2.0)
+      jekyll (~> 3.0)
+    jekyll-redirect-from (0.14.0)
+      jekyll (~> 3.3)
+    jekyll-relative-links (0.6.0)
+      jekyll (~> 3.3)
+    jekyll-remote-theme (0.4.0)
+      addressable (~> 2.0)
+      jekyll (~> 3.5)
+      rubyzip (>= 1.2.1, < 3.0)
+    jekyll-sass-converter (1.5.2)
+      sass (~> 3.4)
+    jekyll-seo-tag (2.5.0)
+      jekyll (~> 3.3)
+    jekyll-sitemap (1.2.0)
+      jekyll (~> 3.3)
+    jekyll-swiss (0.4.0)
+    jekyll-theme-architect (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-cayman (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-dinky (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-hacker (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-leap-day (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-merlot (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-midnight (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-minimal (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-modernist (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-primer (0.5.3)
+      jekyll (~> 3.5)
+      jekyll-github-metadata (~> 2.9)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-slate (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-tactile (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-time-machine (0.1.1)
+      jekyll (~> 3.5)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-titles-from-headings (0.5.1)
+      jekyll (~> 3.3)
+    jekyll-watch (2.2.1)
+      listen (~> 3.0)
+    jemoji (0.10.2)
+      gemoji (~> 3.0)
+      html-pipeline (~> 2.2)
+      jekyll (~> 3.0)
+    kramdown (1.17.0)
+    liquid (4.0.0)
+    listen (3.1.5)
+      rb-fsevent (~> 0.9, >= 0.9.4)
+      rb-inotify (~> 0.9, >= 0.9.7)
+      ruby_dep (~> 1.2)
+    mercenary (0.3.6)
+    mini_portile2 (2.6.1)
+    minima (2.5.0)
+      jekyll (~> 3.5)
+      jekyll-feed (~> 0.9)
+      jekyll-seo-tag (~> 2.1)
+    minitest (5.13.0)
+    multipart-post (2.1.1)
+    nokogiri (1.12.5)
+      mini_portile2 (~> 2.6.1)
+      racc (~> 1.4)
+    octokit (4.14.0)
+      sawyer (~> 0.8.0, >= 0.5.3)
+    pathutil (0.16.2)
+      forwardable-extended (~> 2.6)
+    public_suffix (3.1.1)
+    racc (1.5.2)
+    rb-fsevent (0.10.3)
+    rb-inotify (0.10.0)
+      ffi (~> 1.0)
+    rouge (3.11.0)
+    ruby-enum (0.7.2)
+      i18n
+    ruby_dep (1.5.0)
+    rubyzip (2.0.0)
+    safe_yaml (1.0.5)
+    sass (3.7.4)
+      sass-listen (~> 4.0.0)
+    sass-listen (4.0.0)
+      rb-fsevent (~> 0.9, >= 0.9.4)
+      rb-inotify (~> 0.9, >= 0.9.7)
+    sawyer (0.8.2)
+      addressable (>= 2.3.5)
+      faraday (> 0.8, < 2.0)
+    terminal-table (1.8.0)
+      unicode-display_width (~> 1.1, >= 1.1.1)
+    thread_safe (0.3.6)
+    typhoeus (1.3.1)
+      ethon (>= 0.9.0)
+    tzinfo (1.2.5)
+      thread_safe (~> 0.1)
+    tzinfo-data (1.2019.3)
+      tzinfo (>= 1.0.0)
+    unicode-display_width (1.6.0)
+    wdm (0.1.1)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  github-pages
+  tzinfo (~> 1.2)
+  tzinfo-data
+  wdm (~> 0.1.1)
+
+RUBY VERSION
+   ruby 2.7.0p0
+
+BUNDLED WITH
+   2.1.4

docs/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2017 Can Güney Aksakalli
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.