update release version to latest

HKU-BAL · Jul 19, 2021 · 2619af4 · 2619af4
1 parent 3a75eb6
commit 2619af4
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Showing 4 changed files with 4 additions and 8 deletions.
diff --git a/docs/guppy2.md b/docs/guppy2.md
@@ -18,12 +18,11 @@
 INPUT_DIR="[YOUR_INPUT_FOLDER]"           # e.g. /home/user1/input (absolute path needed)
 OUTPUT_DIR="[YOUR_OUTPUT_FOLDER]"         # e.g. /home/user1/output (absolute path needed)
 THREADS="[MAXIMUM_THREADS]"               # e.g. 8
-BIN_VERSION="v0.1-r4"
 
 docker run -it \
   -v ${INPUT_DIR}:${INPUT_DIR} \
   -v ${OUTPUT_DIR}:${OUTPUT_DIR} \
-  hkubal/clair3:"${BIN_VERSION}" \
+  hkubal/clair3:latest \
   /opt/bin/run_clair3.sh \
   --bam_fn=${INPUT_DIR}/input.bam \       ## change your bam file name here
   --ref_fn=${INPUT_DIR}/ref.fa \          ## change your reference name here

diff --git a/docs/quick_demo/illumina_quick_demo.md b/docs/quick_demo/illumina_quick_demo.md
@@ -49,7 +49,6 @@ echo -e "${CONTIGS}\t${START_POS}\t${END_POS}" > ${INPUT_DIR}/quick_demo.bed
 ### Option 1. Docker pre-built image
 
 ```bash
-BIN_VERSION='v0.1-r4'
 THREADS=4
 cd ${OUTPUT_DIR}
 
@@ -58,7 +57,7 @@ cd ${OUTPUT_DIR}
 docker run -it \
   -v ${INPUT_DIR}:${INPUT_DIR} \
   -v ${OUTPUT_DIR}:${OUTPUT_DIR} \
-  hkubal/clair3:"${BIN_VERSION}" \
+  hkubal/clair3:latest \
   /opt/bin/run_clair3.sh \
   --bam_fn=${INPUT_DIR}/${BAM} \
   --ref_fn=${INPUT_DIR}/${REF} \

diff --git a/docs/quick_demo/ont_quick_demo.md b/docs/quick_demo/ont_quick_demo.md
@@ -49,14 +49,13 @@ echo -e "${CONTIGS}\t${START_POS}\t${END_POS}" > ${INPUT_DIR}/quick_demo.bed
 
 ```bash
 THREADS=4
-BIN_VERSION="v0.1-r4"
 
 cd ${OUTPUT_DIR}
 # Run Clair3 using one command
 docker run -it \
   -v ${INPUT_DIR}:${INPUT_DIR} \
   -v ${OUTPUT_DIR}:${OUTPUT_DIR} \
-  hkubal/clair3:"${BIN_VERSION}" \
+  hkubal/clair3:latest \
   /opt/bin/run_clair3.sh \
   --bam_fn=${INPUT_DIR}/${BAM} \
   --ref_fn=${INPUT_DIR}/${REF} \

diff --git a/docs/quick_demo/pacbio_hifi_quick_demo.md b/docs/quick_demo/pacbio_hifi_quick_demo.md
@@ -50,14 +50,13 @@ echo -e "${CONTIGS}\t${START_POS}\t${END_POS}" > ${INPUT_DIR}/quick_demo.bed
 
 ```bash
 THREADS=4
-BIN_VERSION="v0.1-r4"
 
 cd ${OUTPUT_DIR}
 # Run Clair3 using one command
 docker run -it \
   -v ${INPUT_DIR}:${INPUT_DIR} \
   -v ${OUTPUT_DIR}:${OUTPUT_DIR} \
-  hkubal/clair3:"${BIN_VERSION}" \
+  hkubal/clair3:latest \
   /opt/bin/run_clair3.sh \
   --bam_fn=${INPUT_DIR}/${BAM} \
   --ref_fn=${INPUT_DIR}/${REF} \