v1.0.1-20241107

1.0.1

Project setup

• Improve the user interaction with already set up a project (#33)
• Simply the {renv} activation and install of crucial packages (#34)

Note: this Release is created for ZENODO.

v1.0.1

1.0.1

Project setup

• Improve the user interaction with already set up a project (#33)
• Simply the {renv} activation and install of crucial packages (#34)

v1.0.0

v1.0.0

README

• add a link to a logo (instead of the same file being copied across several GitHub repos)
• add an automatic badge with the latest release

v0.0.2

0.0.2

Individual sections

___Init_project___

• RFossilpol package is installed as the latest release (#15)
• list of packages is updated so it mirrors all packages used in {RFossilpol} and {RUtilpol} (#29)

Config file

• RFossilpol package is only installed once the project is set up (using ___Init_project___) and not updated. This will result in a stable connection between FOSSILPOL Workflow and Package (#15)
• Update the terminology for Config argument other_data into more logical use_other_datasource (#22)
• several fixes of typos (#23, #26, #27)

Download of Neotoma records

• individual records are saved one by one (#10)

Chronology

• save age-depth models as individual files (#13 )
• bugfixes (#17)

Harmonisation

• During cleaning of taxa names, save taxa_refrence_table for back trackability to Neotoma taxonomy (#20)

Outputs

• an overhaul of references (#19)

Other

{renv} package

• upgrade {renv} to v0.17.0 (#28)

Update date

• set date in all scripts to 2023 (#24)

Terminology change

• "Private" to "Other" (#14)
• "sequence" to "record" (#16)
• "other_data" to "use_other_datasource" (#22)

RUtilpol package

• replace all RFossilpol::util_* functions with updated versions from the RUtilpol package (#11)
• bugfixes:
  • update the object_to_save argument to line up with the latest RUtilpol version (#12)

Lintr and formating

• standardise if formatting (#18 )
• Logical test - replace with isTRUE() (#21)

private pre-release

v0.0.2-for_review

A pre-release version was submitted as an example with mns for reviewers.

private pre-release

v0.0.1

Stable pre-release version
The project has been distributed non-publically with close collaborators for QA.