Lorr1 master pr (#67)

* Fix apidocs

* BootlegAnnotator fixes

* BootlegAnnotator fixes

* Updates to tutorial instructions

* Reduced memory title embeddings and lower cased mention addition

* Modified fit profile to write to mmap directly

* Merge before new PIP

* Bump pydantic version

* Ready for 1.0.5

CHANGELOG.rst

@@ -1,11 +1,15 @@
-Unreleased 1.0.5dev0
+1.0.5 - 2021-08-20
 ---------------------
+Fixed
+^^^^^^^^
+* Fixed -1 command line argparse error
+* Adjusted requirements
 
 Added
 ^^^^^^
 * Tutorial to generate contextualized entity embeddings that perform better downstream
 
-1.0.3 - 2021-07-12
+1.0.4 - 2021-07-12
 ---------------------
 Fixed
 ^^^^^^^^

bootleg/_version.py

@@ -1,2 +1,2 @@
 """Bootleg version."""
-__version__ = "1.0.5dev"
+__version__ = "1.0.5"

requirements-dev.txt

@@ -9,19 +9,19 @@ notebook~=6.1.5
 numpy~=1.19.0
 pandas~=1.2.3
 progressbar==2.5
-pydantic==1.7.4
+pydantic~=1.7
 rich==10.1.0
 scikit_learn~=0.24.1
 scipy~=1.6.1
 sentencepiece==0.1.*
 spacy==3.0.*
 tagme==0.1.3
 tensorboardX==2.1.*
-tensorboard==2.4.*
-torch~=1.7.0
-tqdm==4.49.0
+tensorboard==2.5.*
+torch>=1.7.0,<1.10.0
+tqdm>=4.27
 transformers>=4.0.0,<5.0.0
-ujson==4.0.2
+ujson~=4.1
 black==20.8b1
 docformatter==1.4
 flake8==3.9.0

requirements.txt

@@ -9,16 +9,16 @@ notebook~=6.1.5
 numpy~=1.19.0
 pandas~=1.2.3
 progressbar==2.5
-pydantic==1.7.4
+pydantic~=1.7
 rich==10.1.0
 scikit_learn~=0.24.1
 scipy~=1.6.1
 sentencepiece==0.1.*
 spacy==3.0.*
 tagme==0.1.3
 tensorboardX==2.1.*
-tensorboard==2.4.*
-torch~=1.7.0
-tqdm==4.49.0
+tensorboard==2.5.*
+torch>=1.7.0,<1.10.0
+tqdm>=4.27
 transformers>=4.0.0,<5.0.0
-ujson==4.0.2
+ujson~=4.1

setup.py

@@ -2,7 +2,7 @@
 
 setup(
     name="bootleg",
-    version="1.0.5dev",
+    version="1.0.5",
     description="Bootleg NED System",
     packages=find_packages(),
     url="https://github.com/HazyResearch/bootleg",