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HelenaLC
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Jan 14, 2022
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| { | ||
| "BASiCS": ["b"], | ||
| "ESCO": ["n", "b", "k"], | ||
| "hierarchicell": ["n", "b"], | ||
| "muscat": ["n", "b", "k"], | ||
| "POWSC": ["n", "k"], | ||
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| "scDesign": ["n"], | ||
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| "SCRIP": ["n", "b", "k"], | ||
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| "zingeR": ["n"] | ||
| } |
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| @@ -0,0 +1,17 @@ | ||
| { | ||
| "panc8,inDrop1.beta": { | ||
| "type": "n", | ||
| "n_genes": ["4000", "2000", "1000", "500"], | ||
| "n_cells": ["800", "400", "200", "100"] | ||
| }, | ||
| "Mereu20,CD4T": { | ||
| "type": "b", | ||
| "n_genes": ["4000", "2000", "1000", "500"], | ||
| "n_cells": ["2600", "1300", "650", "325"] | ||
| }, | ||
| "Zheng17,foo": { | ||
| "type": "k", | ||
| "n_genes": ["3200", "1600", "800", "400"], | ||
| "n_cells": ["2600", "1300", "650", "325"] | ||
| } | ||
| } |
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| { | ||
| "CellBench": { | ||
| "H2228": { | ||
| "type": "b", | ||
| "n_cells": "400", | ||
| "n_genes": "4000", | ||
| "cluster": "H2228" | ||
| }, | ||
| "CELSeq": { | ||
| "type": "k", | ||
| "n_cells": "400", | ||
| "n_genes": "4000", | ||
| "batch": "sc_celseq" | ||
| } | ||
| }, | ||
| "Ding20": { | ||
| "10x.InhibNeuron": { | ||
| "type": "n", | ||
| "n_cells": null, | ||
| "n_genes": "4000", | ||
| "batch": "10x Chromium", | ||
| "cluster": "Inhibitory neuron" | ||
| }, | ||
| "ExcitNeuron": { | ||
| "type": "b", | ||
| "n_cells": "200", | ||
| "n_genes": "4000", | ||
| "cluster": "Excitatory neuron" | ||
| }, | ||
| "DroNcSeq": { | ||
| "type": "k", | ||
| "n_cells": "200", | ||
| "n_genes": "4000", | ||
| "batch": "DroNc-seq" | ||
| } | ||
| }, | ||
| "Gierahn17" : { | ||
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| "type": "n", | ||
| "n_cells": null, | ||
| "n_genes": "4000" | ||
| } | ||
| }, | ||
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| "1015": { | ||
| "type": "k", | ||
| "n_cells": "400", | ||
| "n_genes": "4000", | ||
| "batch": "1015" | ||
| }, | ||
| "B": { | ||
| "type": "n", | ||
| "n_cells": null, | ||
| "n_genes": "4000", | ||
| "batch": "1015", | ||
| "cluster": "B cells" | ||
| }, | ||
| "NK": { | ||
| "type": "n", | ||
| "n_cells": null, | ||
| "n_genes": "4000", | ||
| "batch": "1015", | ||
| "cluster": "NK cells" | ||
| } | ||
| }, | ||
| "Koh16": { | ||
| "foo": { | ||
| "type": "k", | ||
| "n_cells": null, | ||
| "n_genes": "4000" | ||
| } | ||
| }, | ||
| "MCA20.gland": { | ||
| "T": { | ||
| "type": "b", | ||
| "n_cells": null, | ||
| "n_genes": 4000, | ||
| "cluster": "T cell_Cd8b1 high" | ||
| } | ||
| }, | ||
| "MCA20.lung": { | ||
| "AT2": { | ||
| "type": "b", | ||
| "n_cells": null, | ||
| "n_genes": 4000, | ||
| "cluster": "AT2 Cell" | ||
| } | ||
| }, | ||
| "Mereu20":{ | ||
| "CD4T": { | ||
| "type": "b", | ||
| "n_cells": "200", | ||
| "n_genes": "4000", | ||
| "cluster": "CD4 T cells" | ||
| }, | ||
| "ddSeq": { | ||
| "type": "k", | ||
| "n_cells": "400", | ||
| "n_genes": "4000", | ||
| "batch": "ddSEQ" | ||
| } | ||
| }, | ||
| "Oetjen18": { | ||
| "R": { | ||
| "type": "n", | ||
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| "n_genes": "4000", | ||
| "batch": "R" | ||
| }, | ||
| "foo": { | ||
| "type": "b", | ||
| "n_cells": "200", | ||
| "n_genes": "4000" | ||
| } | ||
| }, | ||
| "panc8": { | ||
| "inDrop1.beta": { | ||
| "type": "n", | ||
| "n_cells": null, | ||
| "n_genes": "4000", | ||
| "batch": "indrop1", | ||
| "cluster": "beta" | ||
| }, | ||
| "inDrop.ductal": { | ||
| "type": "b", | ||
| "n_cells": null, | ||
| "n_genes": "4000", | ||
| "batch": ["indrop1", "indrop2", "indrop3", "indrop4"], | ||
| "cluster": "ductal" | ||
| }, | ||
| "SmartSeq2": { | ||
| "type": "k", | ||
| "n_cells": "400", | ||
| "n_genes": "4000", | ||
| "batch": "smartseq2" | ||
| } | ||
| }, | ||
| "TabulaMuris": { | ||
| "limb.MSCs": { | ||
| "type": "n", | ||
| "n_cells": null, | ||
| "n_genes": "4000", | ||
| "tissue": "Limb_Muscle", | ||
| "cluster": "mesenchymal stem cell" | ||
| }, | ||
| "spleen": { | ||
| "type": "k", | ||
| "n_cells": "400", | ||
| "n_genes": "4000", | ||
| "tissue": "Spleen" | ||
| } | ||
| }, | ||
| "Tung17": { | ||
| "foo": { | ||
| "type": "b", | ||
| "n_cells": "400", | ||
| "n_genes": "4000" | ||
| }, | ||
| "NA19101": { | ||
| "type": "n", | ||
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| "n_genes": "4000", | ||
| "batch": "NA19101" | ||
| } | ||
| }, | ||
| "Zheng17": { | ||
| "foo": { | ||
| "type": "k", | ||
| "n_cells": "400", | ||
| "n_genes": "4000" | ||
| }, | ||
| "HSCs": { | ||
| "type": "n", | ||
| "n_cells": null, | ||
| "n_genes": "4000", | ||
| "cluster": "HSCs CD34+" | ||
| }, | ||
| "Monocytes": { | ||
| "type": "n", | ||
| "n_cells": "400", | ||
| "n_genes": "4000", | ||
| "cluster": "Monocytes CD14+" | ||
| } | ||
| } | ||
| } |