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Update NGFF converted studies #200

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Aug 15, 2024
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Update NGFF converted studies #200

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34290b0
Update NGFF converted studies
dominikl Aug 7, 2024
3a45054
Update releases.tsv for prod122
dominikl Aug 7, 2024
1f3b164
Add database size for prod122
sbesson Aug 12, 2024
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1 change: 1 addition & 0 deletions _data/releases.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -75,3 +75,4 @@ Date Data release Code version Sets Wells Experiments Images Planes Size (TB) Fi
2023-10-09 prod119 0.11.9 21617 1978974 14012392 118390729 384.893134429384 38.160129 468.92 125
2024-03-05 prod120 0.12.0 21628 1978974 14017840 118660875 385.67365086156303 38.176475 471.31 127
2024-05-20 prod121 0.12.1 21660 1978974 14018967 118814421 399.030210159843 38.179857 471.45 128
2024-07-03 prod122 0.12.2 21660 1978974 14018967 118814421 409.427319995011 200.818337 482.32 128
38 changes: 19 additions & 19 deletions _data/studies.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ Study Container Introduced Internal ID Sets Wells Experiments (wells for screens
idr0001-graml-sysgro screenA demo1 3 192 18432 18432 3005 1143 109728 3511296 10.05569923 10055699234784 219606 45.78972904 1376 x 1040 x 16 x 2 x 1 cell
idr0002-heriche-condensation screenA demo2 102 12 1152 1152 102 12 1152 773760 2.095992298 2095992297526 762482 2.74890725 1344 x 1024 x 1 x 2 x 330 cell
idr0003-breker-plasticity screenA demo1 51 85 32640 32640 6234 85 97920 293760 0.2030157197 203015719716 391869 0.5180703748 672 x 512 x 1 x 3 x 1 cell
idr0004-thorpe-rad52 screenA demo1 202 47 4512 4512 4195 47 3765 75308 0.1733497571 173349757055 7628 22.72545321 672 x 510 x 10 x 2 x 1 cell
idr0004-thorpe-rad52 screenA demo1 202 47 4512 4512 4195 47 3765 75308 0.023598144197 23598144197 324281 0.0727706655554905 672 x 510 x 10 x 2 x 1 cell
idr0005-toret-adhesion screenA demo1 597 141 13536 13536 12976 141 40608 40608 0.1181280883 118128088276 81501 1.449406612 1392 x 1040 x 1 x 1 x 1 cell
idr0005-toret-adhesion screenB demo1 751 18 1728 1728 803 18 5184 5184 0.01507941539 15079415394 10406 1.449107764 1392 x 1040 x 1 x 1 x 1 cell
idr0006-fong-nuclearbodies screenA demo1 253 169 16224 16224 12743 169 240848 481696 1.396310131 1396310130588 720292 1.938533443 1392 x 1040 x 1 x 2 x 1 cell
Expand All @@ -11,15 +11,15 @@ idr0008-rohn-actinome screenA demo1 154 58 22272 22272 12274 58 44538 138990 0.0
idr0008-rohn-actinome screenB demo1 206 11 4224 4224 552 11 11406 38760 0.02825362271 28253622710 50154 0.5633373751 696 x 520 x 1 x 3 x 1 cell
idr0009-simpson-secretion screenA demo2 251 964 370176 370176 17953 964 370176 1112064 3.037927562 3037927562310 1477555 2.056050409 1344 x 1024 x 1 x 3 x 1 cell
idr0009-simpson-secretion screenB demo2 803 70 26880 26880 1392 70 26880 80640 0.2120103129 212010312890 104081 2.036974211 1344 x 1024 x 1 x 3 x 1 cell
idr0010-doil-dnadamage screenA demo2 1351 148 56832 56832 18675 148 56832 113664 0.08306083391 83060833910 55986 1.483600077 696 x 520 x 1 x 2 x 1 cell
idr0011-ledesmafernandez-dad4 screenA demo32 1501 129 6192 6192 4746 129 6175 389025 0.2719424452 271942445165 12609 21.56732851 672 x 512 x 21 x 3 x 1 cell
idr0011-ledesmafernandez-dad4 screenB demo32 1551 40 1920 1920 475 40 1806 113628 0.0794297595 79429759498 3693 21.50819374 672 x 512 x 21 x 3 x 1 cell
idr0011-ledesmafernandez-dad4 screenC demo32 1601 4 192 192 101 4 86 5367 0.003752055127 3752055127 181 20.72958634 672 x 512 x 21 x 3 x 1 cell
idr0012-fuchs-cellmorph screenA demo31 1202 68 26112 26112 16701 68 45692 137076 0.3800784721 380078472112 182905 2.07801029 1344 x 1024 x 1.13 x 2.9 x 1 cell
idr0013-neumann-mitocheck screenA demo1 1101 510 195840 195840 18393 510 191368 17851318 13.90126882 13901268824248 383746 36.22518235 1344 x 1024 x 1 x 1 x 93 cell
idr0013-neumann-mitocheck screenB demo1 1302 28 10752 10752 1127 28 9627 904248 0.6372969742 637296974242 19311 33.00175932 1344 x 1024 x 1 x 1 x 94 cell
idr0015-colin-taraoceans screenA demo1 1201 84 33264 84 84 84 32776 3319125 2.494360073 2494360072781 3351835 0.7441774648 2048 x 2048 x 20 x 5 x 1 cell
idr0016-wawer-bioactivecompoundprofiling screenA demo31 1251 413 158592 158592 29542 413 934332 4671660 3.189381488 3189381488112 5203933 0.6128790452 696 x 520 x 1 x 5 x 1 cell
idr0010-doil-dnadamage screenA demo2 1351 148 56832 56832 18675 148 56832 113664 0.099947310902 99947310902 736471 0.135711129022052 696 x 520 x 1 x 2 x 1 cell
idr0011-ledesmafernandez-dad4 screenA demo32 1501 129 6192 6192 4746 129 6175 389025 0.34802577145 348025771450 1211646 0.287233871485566 672 x 512 x 21 x 3 x 1 cell
idr0011-ledesmafernandez-dad4 screenB demo32 1551 40 1920 1920 475 40 1806 113628 0.101014278546 101014278546 352785 0.28633382526468 672 x 512 x 21 x 3 x 1 cell
idr0011-ledesmafernandez-dad4 screenC demo32 1601 4 192 192 101 4 86 5367 0.004803192302 4803192302 16747 0.286809118170419 672 x 512 x 21 x 3 x 1 cell
idr0012-fuchs-cellmorph screenA demo31 1202 68 26112 26112 16701 68 45692 137076 0.491171661385 491171661385 1006656 0.487924038981539 1344 x 1024 x 1.13 x 2.9 x 1 cell
idr0013-neumann-mitocheck screenA demo1 1101 510 195840 195840 18393 510 191368 17851318 18.979222112102 18979222112102 90833209 0.208945850543517 1344 x 1024 x 1 x 1 x 93 cell
idr0013-neumann-mitocheck screenB demo1 1302 28 10752 10752 1127 28 9627 904248 0.975198873857 975198873857 4598798 0.212055166123191 1344 x 1024 x 1 x 1 x 94 cell
idr0015-colin-taraoceans screenA demo1 1201 84 33264 84 84 84 32776 3319125 6.606517967503 6606517967503 23498354 0.281148116480967 2048 x 2048 x 20 x 5 x 1 cell
idr0016-wawer-bioactivecompoundprofiling screenA demo31 1251 413 158592 158592 29542 413 934332 4671660 2.71654297217 2716542972170 24611441 0.110377241713315 696 x 520 x 1 x 5 x 1 cell
idr0017-breinig-drugscreen screenA demo1 1151 96 36864 36864 1281 96 147456 294912 2.475378781 2475378780549 439490 5.632389316 2048 x 2048 x 1 x 2 x 1 cell
idr0018-neff-histopathology experimentA demo2 101 248 0 248 9 0 899 2237 0.2661719315 266171931504 1778 149.7029986 40673 x 23249 x 1 x 2 x 1 tissue
idr0019-sero-nfkappab screenA demo32 1203 7 2156 2156 198 7 25872 77616 0.02699291406 26992914057 51773 0.5213704838 668 x 501 x 1 x 3 x 1 cell
Expand All @@ -28,18 +28,18 @@ idr0021-lawo-pericentriolarmaterial experimentA demo2 51 10 0 414 9 10 414 935 0
idr0022-koedoot-cellmigration screenA prod70 2151 524 50304 50304 524 1810944 1810944 1.256945644 1256945643520 209901 5.988278491 672 x 512 x 1 x 1 x 1 cell
idr0022-koedoot-cellmigration screenB prod70 2152 152 14592 14592 152 525312 525312 0.3634538988 363453898752 16540 21.97423813 672 x 512 x 1 x 1 x 1 cell
idr0023-szymborska-nuclearpore experimentA demo2 52 55 0 359 8 55 524 106085 0.000515497812 515497812 1573 0.3277163458 1250 x 1250 x 202 x 1 x 1 cell
idr0025-stadler-proteinatlas screenA demo34 1851 3 288 288 72 3 1152 3456 0.01454160245 14541602452 4615 3.15094311 2048 x 2048 x 1 x 3 x 1 cell
idr0026-weigelin-immunotherapy experimentA demo35 301 18 0 18 18 18 227 959148 0.4824955621 482495562055 24739 19.50343838 501.0 x 497.9 x 103.3 x 3.4 x 56.5 tissue
idr0025-stadler-proteinatlas screenA demo34 1851 3 288 288 72 3 1152 3456 0.003546630216 3546630216 31723 0.111799962676922 2048 x 2048 x 1 x 3 x 1 cell
idr0026-weigelin-immunotherapy experimentA demo35 301 18 0 18 18 18 227 959148 0.303649894157 303649894157 1072214 0.283198964159207 501.0 x 497.9 x 103.3 x 3.4 x 56.5 tissue
idr0027-dickerson-chromatin experimentA demo3 151 8 0 112 8 8 229 697100 0.03053021592 30530215918 802 38.0676009 122 x 122 x 17 x 2 x 87 cell
idr0028-pascualvargas-rhogtpases screenA demo3 1651 4 960 960 140 26880 107520 0.03053746629 30537466292 53778 0.5678431011 667 x 501 x 1 x 4 x 1 cell
idr0028-pascualvargas-rhogtpases screenB demo3 1652 4 1523 1523 170 4 42644 170576 0.0491721367 49172136697 74582 0.6593030047 667 x 500 x 1 x 4 x 1 cell
idr0028-pascualvargas-rhogtpases screenC demo3 1653 4 1525 1525 143 4 42700 170800 0.04748796707 47487967069 85418 0.5559480094 667 x 500 x 1 x 4 x 1 cell
idr0030-sero-yap screenA demo34 1801 10 3080 3080 949 10 92400 369600 0.1408710078 140871007844 184840 0.7621240416 647.2 x 498.0 x 1 x 4 x 1 cell
idr0032-yang-meristem experimentA demo32 201 115 0 115 115 0 458 1374 0.002968570159 2968570159 1375 2.158960116 1063 x 1063 x 1 x 3 x 1 tissue
idr0033-rohban-pathways screenA demo34 1751 12 4608 4608 189 12 41472 207360 0.4866593388 486659338763 248856 1.955586117 1080 x 1080 x 1 x 5 x 1 cell
idr0033-rohban-pathways screenA demo34 1751 12 4608 4608 189 12 41472 207360 0.647970429679 647970429679 1709829 0.378967972632936 1080 x 1080 x 1 x 5 x 1 cell
idr0034-kilpinen-hipsci screenA prod37 1901 29 1536 684 86 29 6156 24624 0.1106760836 110676083636 68559 1.614318815 1360 x 1024 x 1 x 4 x 1 cell
idr0035-caie-drugresponse screenA prod45 2001 55 5280 5280 55 13200 39600 0.1042671392 104267139150 52911 1.970613656 1280 x 1024 x 1 x 3 x 1 cell
idr0036-gustafsdottir-cellpainting screenA prod43 1952 20 7680 7680 20 69120 345600 0.2534836035 253483603463 459902 0.5511687348 696 x 520 x 1 x 5 x 1 cell
idr0035-caie-drugresponse screenA prod45 2001 55 5280 5280 55 13200 39600 0.112523139532 112523139532 284461 0.39556613923174 1280 x 1024 x 1 x 3 x 1 cell
idr0036-gustafsdottir-cellpainting screenA prod43 1952 20 7680 7680 20 69120 345600 0.202758614962 202758614962 1812861 0.111844545699863 696 x 520 x 1 x 5 x 1 cell
idr0037-vigilante-hipsci screenA prod64 2051 69 3303 3303 69 29727 120312 0.2475409543 247540954296 159496 1.552019827 1360 x 1024 x 1 x 4 x 1 cell
idr0038-held-kidneylightsheet experimentA prod44 351 7 0 18 15 0 74 132590 0.818378455 818378455049 111 7372.778874 1833.2 x 1777.8 x 548.3 x 3.4 x 1 tissue
idr0038-held-kidneylightsheet experimentB prod44 352 4 0 4 4 0 10 9275 0.06840395765 68403957651 19 3600.208297 1920 x 1920 x 411.7 x 2.2 x 1 tissue
Expand All @@ -55,15 +55,15 @@ idr0050-springer-cytoskeletalsystems experimentA prod63 505 32 0 32 0 4816 3132
idr0052-walther-condensinmap experimentA prod66 752 44 0 44 0 282 699360 0.1400874804 140087480413 17767 7.884700873 256 x 256 x 31 x 2 x 40 cell
idr0052-walther-condensinmap experimentB prod66 753 13 0 13 0 68 65988 0.003284121226 3284121226 205 16.02010354 128 x 128 x 9 x 3 x 35.9 cell
idr0052-walther-condensinmap experimentC prod66 754 6 0 6 0 171 8720 0.000531108007 531108007 856 0.6204532792 169.3 x 177.0 x 25.5 x 2 x 1 cell
idr0051-fulton-tailbudlightsheet experimentA prod60 552 3 0 3 0 5 243029 0.01510907904 15109079040 627 24.09741474 429 x 463 x 357 x 1 x 122 tissue
idr0051-fulton-tailbudlightsheet experimentA prod60 552 3 0 3 0 5 243029 0.019364970628 19364970628 572217 0.0338420050924737 429 x 463 x 357 x 1 x 122 tissue
idr0053-faas-virtualnanoscopy experimentA prod62 504 4 0 4 0 5 11 0.532245095 532245095014 17 31308.535 225078.4 x 113347.2 x 1 x 2.2 x 1 tissue
idr0054-segura-tonsilhyperion experimentA prod65 701 1 0 1 0 3 81 0.000200247605 200247605 91 2.200523132 2500 x 2500 x 1 x 27 x 1 tissue
idr0054-segura-tonsilhyperion experimentA prod65 701 1 0 1 0 3 81 0.000414581301 414581301 1336 0.31031534505988 2500 x 2500 x 1 x 27 x 1 tissue
idr0056-stojic-lncrnas screenA prod80 2301 10 3080 8 92400 369600 0.246390360251 246390360251 166953 1.4758067255515026 660 x 501 x 1 x 4 x 1 cell
idr0056-stojic-lncrnas screenB prod80 2302 10 3837 9 115110 460440 0.302740581841 302740581841 219100 1.3817461517161114 660 x 494 x 1 x 4 x 1 cell
idr0056-stojic-lncrnas screenC prod80 2303 2 480 0 13440 53760 0.036026463637 36026463637 13929 2.586435755402398 667 x 499 x 1 x 4 x 1 cell
idr0061-wolf-spindlepositioning screenA prod68 2101 31 2976 2976 31 5952 1071360 8.444 9066895195262 1085415 7.96641383919385 2048 x 2048 x 1 x 1 x 180 cell
idr0062-blin-nuclearsegmentation experimentA prod67 801 5 0 5 0 22 8222 0.02161802412 21618024122 94 229.97898 618.0 x 548.0 x 168.0 x 3 x 1 cell
idr0064-goglia-erkdynamics screenA prod81 2351 9 1071 0 450 108900 0.057141681707 57141681707 919 62.17810849510337 512 x 512 x 1 x 2 x 121 cell
idr0064-goglia-erkdynamics screenA prod81 2351 9 1071 0 450 108900 0.070482826998 70482826998 220600 0.319505108785132 512 x 512 x 1 x 2 x 121 cell
idr0065-camsund-crispri experimentA prod72 901 13 0 0 1170 1125540 3.100002577126 3100002577126 846486 3.662201828649263 2048 x 879 x 1 x 2 x 481 cell
idr0065-camsund-crispri experimentB prod72 902 143 0 0 12870 64350 0.232502905507 232502905507 77520 2.999263486932404 2048 x 879 x 1 x 5 x 1 cell
idr0066-voigt-mesospim experimentA prod70 851 2 0 2 0 6 8222 0.03252215387 32522153872 18 1806.786326 2048 x 1668 x 646 x 1 x 1 tissue
Expand Down Expand Up @@ -120,7 +120,7 @@ idr0097-reicher-proteintag experimentC prod93 1603 3 0 0 33 81 0.054190487738
idr0097-reicher-proteintag screenA prod93 2801 8 720 8 3600 3600 0.005884477188 5884477188 7273 0.8090852726522755 1080 x 1080 x 1 x 1 x 1 cell
idr0098-huang-octmos experimentA prod93 1605 8 0 0 6800 3173956 2.822721392054 2822721392054 20401 138.361913242194 616 x 343 x 467 x 1 x 1 tissue
idr0098-huang-octmos experimentB prod93 1606 3 0 0 18 42 0.012762546217 12762546217 31 411.6950392580645 78373 x 27356 x 1 x 2 x 1 tissue
idr0090-ashdown-malaria screenA prod94 2851 22 1493 0 17408 2698240 22.604516135004 22604516135004 34861 648.4184657641491 2048 x 2044 x 31 x 5 x 1 cell
idr0090-ashdown-malaria screenA prod94 2851 22 1493 0 17408 2698240 23.922691530824 23922691530824 19792199 1.20869295679697 2048 x 2044 x 31 x 5 x 1 cell
idr0099-jain-beetlelightsheet experimentA prod94 1651 5 0 0 5 2292429 9.02672706133 9026727061330 2234 4040.611934346464 1057 x 1797 x 1045 x 1 x 444 tissue
idr0093-mueller-perturbation screenA prod95 2751 83 31872 83 233505 934020 10.329513984 10329513984000 1182758 8.73 2560 x 2160 x 1 x 4 x 1 cell
idr0106-kubota-lunglightsheet experimentA prod95 1701 1 0 0 1 1203 0.044341448828 44341448828 1207 36.73690872245236 4992 x 4255 x 401 x 3 x 1 tissue
Expand Down
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