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fix overflow number of reference contig #56

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TomofumiSaka
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Dear DRAGMAP developer,

I encountered following bug with hg38 reference and additional many contigs (total1052041 contigs) .

vector::_M_range_check: __n (which is 18446744073709547104) >= this->size() (which is 1052041)

This bug occurred because the maximum number of short type reference contigs was exceeded.
I fixed related short type to int. I expect this fix to have little impact on memory usage and performance.

edmundmiller pushed a commit to bioinformaticsorphanage/NARFMAP that referenced this pull request Dec 7, 2023
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