Merge branch 'main' of github.com:JGIBristol/zebrafish_jaw_segmentation #275
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| name: UT/IT | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| # NB I kept having mamba issues so this is how i'm doing it | |
| - name: Set up environment | |
| run: | | |
| ./install_env.sh | |
| source "${HOME}/fishconda/etc/profile.d/conda.sh" | |
| conda update -n base -c conda-forge conda | |
| - name: Run Unit Tests | |
| run: | | |
| source "${HOME}/fishconda/etc/profile.d/conda.sh" | |
| conda activate zebrafish_jaw_segmentation | |
| python -m pytest fishjaw/test/test_unit | |
| - name: Run Integration Tests | |
| run: | | |
| source "${HOME}/fishconda/etc/profile.d/conda.sh" | |
| conda activate zebrafish_jaw_segmentation | |
| python -m pytest fishjaw/test/test_integration |