Test Installation on mac linux and all Python versions #4
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| name: Test Installation on mac linux and all Python versions | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] #[ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up MSYS2 (Windows only) | |
| if: runner.os == 'Windows' | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| install: base-devel gcc | |
| - name: Install dependencies and run setup script | |
| shell: bash | |
| run: | | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| export PATH="/c/msys64/usr/bin:$PATH" | |
| fi | |
| python --version | |
| which python | |
| chmod +x setup.sh | |
| ./setup.sh | |
| - name: Test installation | |
| shell: bash | |
| run: | | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| source chswEnv/Scripts/activate | |
| else | |
| source chswEnv/bin/activate | |
| fi | |
| python get_predictions.py --structure_file example_files/AF-A0A1W2PQ64-F1-model_v4.pdb --output results/test.tsv | |
| - name: Run pytest | |
| shell: bash | |
| run: | | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| export PATH="/c/msys64/usr/bin:$PATH" | |
| source chswEnv/Scripts/activate | |
| else | |
| source chswEnv/bin/activate | |
| fi | |
| python -c "import sys; print(sys.path)" | |
| python -c "import torch; print(torch.__version__)" | |
| pwd | |
| pytest -v | |
| pytest |