Fix autogenerated links to OpenMPI/MPICH docs #1361
Workflow file for this run
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| name: Unit Tests | |
| on: | |
| pull_request: | |
| paths: | |
| - '.github/workflows/UnitTests.yml' | |
| - 'bin/**' | |
| - 'deps/**' | |
| - 'src/**' | |
| - 'test/**' | |
| - 'lib/**' | |
| push: | |
| branches: | |
| - master | |
| - release-* | |
| paths: | |
| - '.github/workflows/UnitTests.yml' | |
| - 'bin/**' | |
| - 'deps/**' | |
| - 'src/**' | |
| - 'test/**' | |
| - 'lib/**' | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: always. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test-default: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-13 | |
| - ubuntu-latest | |
| - windows-latest | |
| julia_version: | |
| - "1.6" | |
| - "1" | |
| - "nightly" | |
| julia_arch: [x64, x86] | |
| exclude: | |
| - os: macos-13 | |
| julia_arch: x86 | |
| include: | |
| - os: macos-14 | |
| julia_arch: "aarch64" | |
| julia_version: "1" | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| arch: ${{ matrix.julia_arch }} | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - uses: julia-actions/julia-runtest@v1 | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: lcov.info | |
| - uses: julia-actions/julia-uploadcoveralls@v1 | |
| continue-on-error: true | |
| env: | |
| COVERALLS_TOKEN: ${{ secrets.COVERALLS_TOKEN }} | |
| test-openmpi-jll: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-13 | |
| - ubuntu-latest | |
| julia_version: | |
| - "1.6" | |
| - "1" | |
| - "nightly" | |
| julia_arch: [x64, x86] | |
| exclude: | |
| - os: macos-13 | |
| julia_arch: x86 | |
| fail-fast: false | |
| env: | |
| JULIA_MPI_TEST_BINARY: OpenMPI_jll | |
| JULIA_MPI_TEST_ABI: OpenMPI | |
| OMPI_MCA_btl_base_warn_component_unused: 0 | |
| OMPI_MCA_rmaps_base_oversubscribe: true | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| arch: ${{ matrix.julia_arch }} | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use OpenMPI_jll | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_jll_binary("OpenMPI_jll", export_prefs=true) | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@v1 | |
| test-system-brew: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-13 | |
| - macos-14 | |
| mpi: | |
| - mpich | |
| - openmpi | |
| julia_version: | |
| - "1" | |
| julia_arch: | |
| - "x64" | |
| - "aarch64" | |
| exclude: | |
| - os: macos-13 | |
| julia_arch: "aarch64" | |
| - os: macos-14 | |
| julia_arch: "x64" | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| ZES_ENABLE_SYSMAN: 1 # https://github.com/open-mpi/ompi/issues/10142 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install MPI via homebrew | |
| run: | | |
| brew install "${{ matrix.mpi }}" | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| arch: ${{ matrix.julia_arch }} | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use system MPI | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences | |
| mpi_prefix = readchomp(`brew --prefix ${{ matrix.mpi }}`) | |
| libdir = joinpath(mpi_prefix, "lib") | |
| MPIPreferences.use_system_binary(; extra_paths=[libdir]) | |
| - uses: julia-actions/julia-runtest@v1 | |
| env: | |
| # TODO: Only disable this test for MPICH. OpenMPI works fine. | |
| JULIA_MPI_TEST_DISABLE_REDUCE_ON_APPLE: 1 | |
| test-system-apt: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| mpi: | |
| - libmpich-dev | |
| - libopenmpi-dev | |
| julia_version: | |
| - "1" | |
| fail-fast: false | |
| runs-on: ubuntu-20.04 | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| OMPI_MCA_btl_base_warn_component_unused: 0 | |
| OMPI_MCA_rmaps_base_oversubscribe: true | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install MPI via apt | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install $MPI | |
| env: | |
| MPI: ${{ matrix.mpi }} | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use system MPI | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary() | |
| - uses: julia-actions/julia-runtest@v1 | |
| test-intel-linux: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| include: | |
| - container: ghcr.io/juliaparallel/github-actions-buildcache:intel-mpi-jq | |
| name: "Intel MPI 2019.9.304" | |
| - container: ghcr.io/juliaparallel/github-actions-buildcache:intel-oneapi-mpi-jq | |
| name: "Intel oneAPI MPI 2021.11.0" | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| container: ${{ matrix.container }} | |
| name: "Test ${{ matrix.name }}" | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| JULIA_MPI_TEST_ABI: MPICH | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: "1" | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use system MPI | |
| run: | | |
| julia --color=yes --project=. -e ' | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary()' | |
| - uses: julia-actions/julia-runtest@v1 | |
| test-system-msmpi: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| julia_version: | |
| - "1" | |
| fail-fast: false | |
| runs-on: windows-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Download Microsoft MPI | |
| run: (new-object net.webclient).DownloadFile("https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623/msmpisetup.exe", "msmpisetup.exe") | |
| shell: powershell | |
| - name: Install Microsoft MPI | |
| run: msmpisetup.exe -unattend -minimal | |
| shell: cmd | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: add MPIPreferences, use system | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary(; | |
| export_prefs=true, | |
| mpiexec="C:\\Program Files\\Microsoft MPI\\Bin\\mpiexec" | |
| ) | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@v1 | |
| test-mpitrampoline-jll: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-13 | |
| - ubuntu-latest | |
| mpi: [mpitrampoline] | |
| julia_version: | |
| - "1.6" | |
| - "1" | |
| - "nightly" | |
| julia_arch: | |
| - x64 | |
| - x86 | |
| exclude: | |
| - os: macos-13 | |
| julia_arch: x86 | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| JULIA_MPI_TEST_BINARY: MPItrampoline_jll | |
| JULIA_MPI_TEST_ABI: MPItrampoline | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use MPItrampoline_jll | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_jll_binary("MPItrampoline_jll", export_prefs=true) | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@v1 | |
| test-mpitrampoline-system-apt: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| mpi: | |
| - libmpich-dev | |
| - libopenmpi-dev | |
| julia_version: | |
| - "1" | |
| # We don't need to test all combinations | |
| # - "1.7" | |
| # - "nightly" | |
| MPIWrapper: | |
| - "2.11.0" | |
| fail-fast: false | |
| runs-on: ubuntu-20.04 | |
| env: | |
| JULIA_MPI_TEST_BINARY: MPItrampoline_jll | |
| JULIA_MPI_TEST_ABI: MPItrampoline | |
| MPITRAMPOLINE_LIB: /usr/local/lib/libmpiwrapper.so | |
| MPITRAMPOLINE_MPIEXEC: /usr/bin/mpiexec | |
| OMPI_MCA_btl_base_warn_component_unused: 0 | |
| OMPI_MCA_rmaps_base_oversubscribe: true | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install MPI via apt | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install $MPI | |
| env: | |
| MPI: ${{ matrix.mpi }} | |
| - name: Build MPIwrapper | |
| run: | | |
| wget https://github.com/eschnett/MPIwrapper/archive/refs/tags/v${MPIWrapper}.tar.gz | |
| tar xzf v${MPIWrapper}.tar.gz | |
| cd MPIwrapper-* | |
| cmake -DMPIEXEC_EXECUTABLE=mpiexec -DCMAKE_BUILD_TYPE=Debug -DCMAKE_INSTALL_PREFIX=/usr/local . | |
| cmake --build . | |
| sudo cmake --install . | |
| env: | |
| MPIWrapper: ${{matrix.MPIWrapper}} | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use MPItrampoline_jll | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_jll_binary("MPItrampoline_jll", export_prefs=true) | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@v1 | |
| test-mpitrampoline-oneapi-linux: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| julia_version: | |
| - "1" | |
| MPIWrapper: | |
| - "2.11.0" | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/juliaparallel/github-actions-buildcache:intel-oneapi-mpi-jq | |
| env: | |
| JULIA_MPI_TEST_BINARY: MPItrampoline_jll | |
| JULIA_MPI_TEST_ABI: MPItrampoline | |
| MPITRAMPOLINE_LIB: /usr/local/lib/libmpiwrapper.so | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set MPITRAMPOLINE_MPIEXEC | |
| run: echo "MPITRAMPOLINE_MPIEXEC=$(which mpiexec)" >> "${GITHUB_ENV}" | |
| - name: Build MPIwrapper | |
| run: | | |
| apt-get update | |
| apt-get install -y wget cmake gcc g++ gfortran python3 | |
| wget https://github.com/eschnett/MPIwrapper/archive/refs/tags/v${MPIWrapper}.tar.gz | |
| tar xzf v${MPIWrapper}.tar.gz | |
| cd MPIwrapper-* | |
| cmake \ | |
| -DMPIEXEC_EXECUTABLE=mpiexec \ | |
| -DCMAKE_BUILD_TYPE=Debug \ | |
| -DCMAKE_INSTALL_PREFIX=/usr/local \ | |
| . | |
| cmake --build . | |
| cmake --install . | |
| env: | |
| MPIWrapper: ${{matrix.MPIWrapper}} | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use MPItrampoline_jll | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_jll_binary("MPItrampoline_jll", export_prefs=true) | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@v1 | |
| test-spack-mvapich: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| include: | |
| - container: ghcr.io/juliaparallel/github-actions-buildcache:mvapich2-jq | |
| name: "MVAPICH 2.3.7" | |
| - container: ghcr.io/juliaparallel/github-actions-buildcache:mvapich3-jq | |
| name: "MVAPICH 3.0" | |
| fail-fast: false | |
| runs-on: ubuntu-22.04 | |
| container: ${{ matrix.container }} | |
| name: "Test ${{ matrix.name }}" | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| JULIA_MPI_TEST_EXCLUDE: test_spawn.jl | |
| MV2_SMP_USE_CMA: 0 | |
| # Work around issue with affinity not set. Ref: | |
| # https://github.com/JuliaParallel/MPI.jl/pull/810#issuecomment-1920255386 | |
| MVP_ENABLE_AFFINITY: 0 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: "1" | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| Pkg.precompile() | |
| - name: use system MPI | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary() | |
| - uses: julia-actions/julia-runtest@v1 | |
| # TODO: Can remove this once we can use OpenMPI_jll v5 | |
| test-spack-openmpi5: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| include: | |
| - container: ghcr.io/juliaparallel/github-actions-buildcache:openmpi5-jq | |
| name: "OpenMPI 5.0.2" | |
| fail-fast: false | |
| runs-on: ubuntu-22.04 | |
| container: ${{ matrix.container }} | |
| name: "Test ${{ matrix.name }}" | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| JULIA_MPI_TEST_ABI: OpenMPI | |
| # Allow running as root | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| # Allow oversubscription | |
| PRTE_MCA_rmaps_default_mapping_policy: :oversubscribe | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: "1" | |
| - uses: julia-actions/cache@v2 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| Pkg.precompile() | |
| - name: use system MPI | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary() | |
| - uses: julia-actions/julia-runtest@v1 |