Add ruff + basic implementation of ClassicalClassifier

.github/workflows/tests.yaml

@@ -19,6 +19,6 @@ jobs:
         python -m pip install --upgrade pip setuptools
         pip install .[dev]
     - name: Test with pytest
-      run: pytest -v --cov=tclf --pyargs tclf
+      run: pytest -v --cov=src tests/
     - name: Upload Coverage to Codecov
       uses: codecov/codecov-action@v3

pyproject.toml

@@ -2,9 +2,6 @@
 requires = ["setuptools"]
 build-backend = "setuptools.build_meta"
 
-[tool.setuptools]
-packages = ["tclf"]
-
 [project]
 name = "otc"
 authors = [
@@ -35,16 +32,6 @@ dynamic = ["version"]
 "Homepage" = "https://github.com/KarelZe/thesis"
 "Bug Tracker" = "https://github.com/KarelZe/thesis/issues"
 
-[tool.autoflake]
-recursive = true
-in-place = true
-ignore-init-module-imports = true
-remove-all-unused-imports = true
-remove-unused-variables = true
-
-[tool.isort]
-profile = "black"
-
 [tool.mypy]
 # https://github.com/python/mypy/issues/2410
 ignore_missing_imports = true
@@ -55,18 +42,13 @@ disallow_incomplete_defs = true
 [project.optional-dependencies]
 dev=[
     "build",
+    "mypy",
     "pre-commit",
     "pytest",
     "pytest-cov",
     "ruff",
 ]
 
-
-[tool.pylint.TYPECHECK]
-# List of members which are set dynamically and missed by Pylint inference
-# system, and so shouldn't trigger E1101 when accessed.
-generated-members=["numpy.*", "torch.*"]
-
 [tool.pytest.ini_options]
 minversion = 7.0
 addopts = "-ra -p no:warnings -v --cov --cov-report term-missing --doctest-modules"
@@ -79,8 +61,6 @@ omit = [
     "tclf/tests/*",
 ]
 branch = true
-source = ["tclf"]
-include = ["*/tclf/*"]
 
 [tool.coverage.report]
 exclude_also = [
@@ -94,3 +74,47 @@ exclude_also = [
     "if self.verbose:"
     ]
 show_missing = true
+
+
+[tool.ruff]
+# See rules: https://beta.ruff.rs/docs/rules/
+select = [
+    "C",    # flake8-comprehensions
+    "D",    # pydocstyle
+    "E",    # pycodestyle errors
+    "F",    # pyflakes
+    "I",    # isort
+    "N",    # pep8-naming
+    "NPY",  # numpy
+    "PD",   # pandas-vet
+    "PIE",  # misc lints
+    "PT",   # pytest
+    "PTH",  # flake8-use-pathlib
+    "PGH",  # pygrep
+    "RET",  # return
+    "RUF",  # ruff-specific rules
+    "UP",   # pyupgrade
+    "SIM",  # flake8-simplify
+    "W",    # pycodestyle warnings
+]
+
+include = ["*.py", "*.pyi", "**/pyproject.toml", "*.ipynb"]
+
+ignore = [
+    "E501",  # line too long, handled by black
+    "N803",  # argument name should be lowercase
+    "N806",  # variable name should be lowercase
+    "C901",  # too complex
+    "D206",  # indent with white space
+    "W191",  # tab identation
+]
+
+[tool.ruff.isort]
+known-first-party = ["tclf"]
+section-order = ["future", "standard-library", "third-party", "first-party", "local-folder"]
+
+[tool.ruff.per-file-ignores]
+"__init__.py" = ["D104", "F401"]  # disable missing docstrings in __init__, unused imports
+
+[tool.ruff.pydocstyle]
+convention = "google"