WC-Sandbox: Jupyter playground for whole-cell modeling

WC-Sandbox is a collection of Jupyter notebooks for learning about whole-cell modeling. The sandbox is available at https://sandbox.karrlab.org.

Installation

1. Install dependencies

   • Pip >= 18.0
   • Python >= 3.6
   • Requirements for individual WC modeling tools. See An Introduction to Whole-Cell Modeling.

2. Install this package

   • Install the latest release from PyPI

     pip install wc_sandbox
     

   • Install the latest revision from GitHub

     pip install git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils
     pip install git+https://github.com/KarrLab/wc_sandbox.git#egg=wc_sandbox
     

Examples, tutorial, and documentation

Please see the documentation.

License

The package is released under the MIT license.

Development team

This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York, USA.

Questions and comments

Please contact the Karr Lab with any questions or comments.