SingleCellCRC-pipeline

Analytical pipeline of scRNA-seq and spatial transcription datastes of CRC

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
1.collection_of_scRNAseq_data.r		1.collection_of_scRNAseq_data.r
10.Single_cell_metabolism_and_trajectory_analysis.r		10.Single_cell_metabolism_and_trajectory_analysis.r
11.cell-cell_communicaiton_analysis.r		11.cell-cell_communicaiton_analysis.r
12.SCENIC_analysis.r		12.SCENIC_analysis.r
13.cell2location.py		13.cell2location.py
14.validation_of_CIBERSORTx_analysis.r		14.validation_of_CIBERSORTx_analysis.r
2.quality_control_of_scRNAseq_data.r		2.quality_control_of_scRNAseq_data.r
3.clustering.r		3.clustering.r
4.MNN_correction.py		4.MNN_correction.py
5.miloR_analysis.r		5.miloR_analysis.r
6.Palantir_analysis.py		6.Palantir_analysis.py
7.Survival_analysis.r		7.Survival_analysis.r
8.trajectory_analysis_CYTOTRACE.r		8.trajectory_analysis_CYTOTRACE.r
9.trajectory_analysis_monocle3.r		9.trajectory_analysis_monocle3.r
README.md		README.md
functions.r		functions.r
scenic.py		scenic.py

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