0.6.0 - 2024-11-23

Release Notes

Added

• Add zarrs_validate to check that arrays are equivalent
• Add --write-shape argument to zarrs_reencode
  • This enables writing sharded arrays incrementally
• Add cargo binstall install instructions

Changed

• #12 Bump netcdf to 0.10.2 by [@magnusuMET]
• Breaking: Bump MSRV to 1.80
• Bump sysinfo to 0.32
• Bump zarrs to 0.18.0
• ncvar2zarr:
  • Switch to output concurrency
  • Breaking: Rename concurrent-blocks argument to concurrent-chunks
  • Breaking: Removed validate argument
  • Breaking: Removed concat-dim argument. Concatenation is now only supported along the first (slowest varying) dimension
  • This tool is intended to be replaced by icechunk / virtualizarr when they mature
• Move benchmark scripts and measurements to https://github.com/LDeakin/zarr_benchmarks
• Bump zarrs_opendal to 0.4.0 (opendal 0.50)
• Include zarrs version when running binaries with -v/--version
• Cleanup zarrs_info docs and CLI help
• zarrs_ome
  • add OME-Zarr 0.5 support, remove interim 0.5 version support
  • Bump ome_zarr_metadata to 0.2.0
  • Rename --version to --ome-zarr-version
  • Remove --no-gaussian argument
  • Add --gaussian-sigma and --gaussian-kernel-half-size arguments, mean downsampling is now the default
  • Map a "channel" unit to a channel type axis
• Bump thiserror to 2.0.0

Removed

• zarrs_info: Remove --time argument

Fixed

• zarrs_ome fix axis unit parsing (broken in 0.5.3)

Install zarrs_tools 0.6.0

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/LDeakin/zarrs_tools/releases/download/v0.6.0/zarrs_tools-installer.sh | sh

Download zarrs_tools 0.6.0

File	Platform	Checksum
zarrs_tools-aarch64-apple-darwin.tar.xz	Apple Silicon macOS	checksum
zarrs_tools-x86_64-apple-darwin.tar.xz	Intel macOS	checksum
zarrs_tools-x86_64-unknown-linux-gnu.tar.xz	x64 Linux	checksum

0.6.0-beta.1 - 2024-11-15

Release Notes

Added

• Add zarrs_validate to check that arrays are equivalent
• Add --write-shape argument to zarrs_reencode
  • This enables writing sharded arrays incrementally

Changed

• #12 Bump netcdf to 0.10.2 by [@magnusuMET]
• Breaking: Bump MSRV to 1.80
• Bump sysinfo to 0.31
• Bump zarrs to 0.18.0-beta.0
• ncvar2zarr:
  • Switch to output concurrency
  • Breaking: Rename concurrent-blocks argument to concurrent-chunks
  • Breaking: Removed validate argument
  • Breaking: Removed concat-dim argument. Concatenation is now only supported along the first (slowest varying) dimension
  • This tool is intended to be replaced by icechunk / virtualizarr when they mature
• Move benchmark scripts and measurements to https://github.com/LDeakin/zarr_benchmarks
• Bump zarrs_opendal to 0.4.0 (opendal 0.50)

Fixed

• zarrs_ome fix axis unit parsing (broken in 0.5.3)

Install zarrs_tools 0.6.0-beta.1

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/LDeakin/zarrs_tools/releases/download/v0.6.0-beta.1/zarrs_tools-installer.sh | sh

Download zarrs_tools 0.6.0-beta.1

File	Platform	Checksum
zarrs_tools-aarch64-apple-darwin.tar.xz	Apple Silicon macOS	checksum
zarrs_tools-x86_64-apple-darwin.tar.xz	Intel macOS	checksum
zarrs_tools-x86_64-unknown-linux-gnu.tar.xz	x64 Linux	checksum

Version 0.6.0-beta.0

Release Notes

Added

• Add zarrs_validate to check that arrays are equivalent
• Add --write-shape argument to zarrs_reencode
  • This enables writing sharded arrays incrementally

Changed

• #12 Bump netcdf to 0.10.2 by [@magnusuMET]
• Breaking: Bump MSRV to 1.80
• Bump sysinfo to 0.31
• Bump zarrs to 0.18.0-dev
• ncvar2zarr:
  • Switch to output concurrency
  • Breaking: Rename concurrent-blocks argument to concurrent-chunks
  • Breaking: Removed validate argument
  • Breaking: Removed concat-dim argument. Concatenation is now only supported along the first (slowest varying) dimension
  • This tool is intended to be replaced by chunk manifests when the specification and virtualizarr matures
• Move benchmark scripts and measurements to https://github.com/LDeakin/zarr_benchmarks

Fixed

• zarrs_ome fix axis unit parsing (broken in 0.5.3)

Install zarrs_tools 0.6.0-beta.0

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/LDeakin/zarrs_tools/releases/download/v0.6.0-beta.0/zarrs_tools-installer.sh | sh

Download zarrs_tools 0.6.0-beta.0

File	Platform	Checksum
zarrs_tools-aarch64-apple-darwin.tar.xz	Apple Silicon macOS	checksum
zarrs_tools-x86_64-apple-darwin.tar.xz	Intel macOS	checksum
zarrs_tools-x86_64-unknown-linux-gnu.tar.xz	x64 Linux	checksum

v0.5.5

Added

• Add http read support to zarrs_reencode

Changed

• Bump opendal to 0.48

CHANGELOG.md

Full Changelog: v0.5.4...v0.5.5

v0.5.4

Changed

• Bump zarrs to 0.16.0

Fixed

• Fixed zarrs_reencode with --shard-shape applying existing array-to-array and bytes-to-bytes codecs as both inner and outer codecs

CHANGELOG.md

Full Changelog: v0.5.3...v0.5.4

v0.5.3

Added

• Add ome_zarr_metadata dependency for OME-Zarr metadata serialisation

Changed

• zarrs_reencode: revise output and update docs
• Update benchmarks and add plots
• Make the help clearer for valid chunk key encoding separators in various tools

CHANGELOG.md

Full Changelog: v0.5.2...v0.5.3

v0.5.2

Changed

• Add --dimension-names arg to zarrs_filter, zarrs_ome, zarrs_reencode to change dimension names

Fixed

• Remove unused http feature from zarrs dependency

CHANGELOG.md

Full Changelog: v0.5.1...v0.5.2

v0.5.1

Added

• zarrs_info: add group metadata support

Changed

• Bump zarrs to 0.15.0
• Add HTTP store support to most benchmark binaries/scripts

CHANGELOG.md

Full Changelog: v0.5.0...v0.5.1

v0.5.0

Added

• Add zarrs_info (requires info feature): returns information about a Zarr array to stdout (JSON encoded)
  • Metadata
  • Array shape, data type, fill value, dimension names, attributes, etc.
  • Value range
  • Histogram

Changed

• Bump zarrs to 0.15.0-beta.1
• Bump rayon to 1.10.0
• Bump itertools to 0.13
• zarrs_ome: add --version arg, supporting 0.5-dev or 0.5-dev1
• Change zarrs_ome default output behaviour to erase
• Update benchmarks to use zarrs 0.15.0-beta.1

CHANGELOG.md

Full Changelog: v0.4.2...v0.5.0

v0.4.2

Changed

• Bump zarrs to 0.14.0
• Disable concurrent netCDF block processing in zarrs_ncvar2zarr

CHANGELOG.md

Full Changelog: v0.4.1...v0.4.2