update uberenv and related configs

[cyrush]

No description provided.

[cyrush]

First all around successful set of builds, but new spack times are much slower:

	old spack	new spack	new / old ratio
docker	54	74	1.37
ub18_shared_min_cmake_314	35	42	1.20
ub18_shared_py310_cmake_324_hdf5_114	41	84	2.05
ub18_sahred_py31)cmake_236_hdf5_114	43	72	1.67
ub18_py37_cmake_214	42	70	1.67
ub18_py38_cmake_321_hdf5_110	50	69	1.38
ub18_py38_cmake_321_hdf5_112	49	68	1.39
ub_21_py_38_cmake_321	55	71	1.29

Some of this is b/c we are using less system libs.

We had to exclude:

• system curl (did not work to build cmake)
• system xz (caused problems in hdf5 or silo)

I think the big one we are missing is lapack.

That said, even the minimal build is 120% of our prior setup.

Docker builds are timing out on circle CI (circle ci max time is 1 hour, for ref docker build takes 74 minutes now on github actions)

[cyrush]

external lapack pulls us back from the edge of the cliff for circle ci.

[cyrush]

Blocking Issue:

Much like PYTHON_EXECUTABLE, we also need to update the path to SPHINX_EXECUTABLE.

Uberenv can do this, however even though it looks like sphinx was built -- I don't see it in the generated spack env view.
Need to investigate if this is a spec issue or some other bug.

[cyrush]

Spack deps tagged as build don't show up in the env view.

Will see if there is an option to include the, if not I will drop build tag.

[cyrush]

We can add py-sphinx to the env to have it available in the view.

However, when we do so - the main package concretizes with ~python, which undermines using python in a new way.

Talked to Todd Gamblin, the concretizer is making a strange choice.

I decided the simplest solution is to remove the type="build" from the sphinx deps so they will appear in the env view without extra gymnastics.

[cyrush]

sphinx 7.0.0 fails to build docs.

seems like an input config file change.

[cyrush]

Newer spack:
Silo fails to build due to an HDF5 macro issue ?

            MD -MP -MF .deps/H5FDsilo.Tpo -c H5FDsilo.c  -fPIC -DPIC -o .libs/
             H5FDsilo.o
     518     H5FDsilo.c: In function 'file_write':
  >> 519     H5FDsilo.c:265:1: error: expected ';' before '}' token
     520      }
     521      ^
     522     H5FDsilo.c:810:9: note: in expansion of macro 'H5E_PUSH_HELPER'
     523              H5E_PUSH_HELPER (func, H5E_ERR_CLS, H5E_IO, H5E_OVERFLOW,
              "addr undefined", -1, -1)
     524              ^~~~~~~~~~~~~~~
  >> 525     H5FDsilo.c:265:1: error: expected ';' before '}' token
     526      }
     527      ^
     528     H5FDsilo.c:81

Looks the same as spack/spack#39538, however our tests aren't running on arm processors.

mpi4py fails to build on m1 mac

==> Installing py-mpi4py-3.1.4-npoddioxajyd3sjvorqawgvootpsehc2 [70/75]
==> No binary for py-mpi4py-3.1.4-npoddioxajyd3sjvorqawgvootpsehc2 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/17/17858f2ebc623220d0120d1fa8d428d033dde749c4bc35b33d81a66ad7f93480.tar.gz
==> No patches needed for py-mpi4py
==> py-mpi4py: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
    '/Users/harrison37/Work/github/llnl/conduit/uberenv_libs/spack/opt/spack/darwin-ventura-m1/apple-clang-15.0.0/python-3.11.6-teqqopxha5x2pptd2abnw7yuvjeaqff3/bin/python3.11' '-m' 'pip' '-vvv' '--no-input' '--no-cache-dir' '--disable-pip-version-check' 'install' '--no-deps' '--ignore-installed' '--no-build-isolation' '--no-warn-script-location' '--no-index' '--prefix=/Users/harrison37/Work/github/llnl/conduit/uberenv_libs/spack/opt/spack/darwin-ventura-m1/apple-clang-15.0.0/py-mpi4py-3.1.4-npoddioxajyd3sjvorqawgvootpsehc2' '.'

8 errors found in build log:
     97       clang: warning: argument unused during compilation: '-shared' [-Wunused-command-line-argument]
     98       /Users/harrison37/Work/github/llnl/conduit/uberenv_libs/spack/opt/spack/darwin-ventura-m1/apple-clang-15.0.0/openmpi-4.1.6-4fbxie2522twih7jp4vms33vcdbnv2be/b
            in/mpicc -shared -flat_namespace -undefined suppress _configtest.o -llmpe -o _configtest
     99       ld: warning: -undefined suppress is deprecated
     100      ld: warning: -undefined suppress is deprecated
     101      ld: warning: duplicate -rpath '/usr/local/gfortran/lib/' ignored
     102      ld: library 'lmpe' not found
  >> 103    clang: error: linker command failed with exit code 1 (use -v to see invocation)
     104      failure.
     105      removing: _configtest.c _configtest.o
     106      building 'mpe' dylib library
     107      creating build/temp.macosx-13.0-arm64-cpython-311
     108      creating build/temp.macosx-13.0-arm64-cpython-311/src
     109      creating build/temp.macosx-13.0-arm64-cpython-311/src/lib-pmpi

[cyrush]

need more path adjustments

[cyrush]

C++ 17 tests are failing often due to MPI related errors.

Not sure if there are real issues, or if this is a setup and tear down MPI issue related to multiple MPI tests.

EXEC : error : Failed to post close command error 1726