Merge pull request #33 from LUMC/namepatch

Namepatch
LUMC · Jan 8, 2024 · 91fd26f · 91fd26f
2 parents 423a485 + 2b73870
commit 91fd26f
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,7 @@
+version 1.9.1
+-----------------
++ Fix error in launch command.
+
 version 1.9.0
 -----------------
 + Add a no filter region filter. 

diff --git a/shm_csr.xml b/shm_csr.xml
@@ -1,4 +1,4 @@
-<tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.9.0" profile="16.04">
+<tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.9.1" profile="16.04">
 	<description></description>
 	<requirements>
 		<requirement type="package" version="3.7.1">python</requirement>
@@ -37,8 +37,8 @@
 			$empty_region_filter
 			$fast
 		#else:
-			$__tool_directory__/wrapper.sh
-			"$input" custom
+			$__tool_directory__/wrapper.sh "$in_file"
+			custom
 			$out_file $out_file.files_path
 			"${in_file.name}" "-" $functionality $unique
 			$naive_output_cond.naive_output $naive_output_ca $naive_output_cg