libEnsemble-complete-CI #271
Workflow file for this run
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name: libEnsemble-complete-CI | |
on: | |
workflow_dispatch: | |
jobs: | |
test-libE: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest] | |
mpi-version: [mpich] | |
python-version: [3.9, "3.10", "3.11", "3.12"] | |
pydantic-version: ["2.8.2"] | |
comms-type: [m, l] | |
include: | |
- os: macos-latest | |
python-version: 3.11 | |
mpi-version: mpich | |
pydantic-version: "2.8.2" | |
comms-type: m | |
- os: macos-latest | |
python-version: 3.11 | |
mpi-version: mpich | |
pydantic-version: "2.8.2" | |
comms-type: l | |
- os: ubuntu-latest | |
python-version: "3.10" | |
mpi-version: mpich | |
pydantic-version: "2.8.2" | |
comms-type: t | |
- os: ubuntu-latest | |
mpi-version: "openmpi" | |
pydantic-version: "2.8.2" | |
python-version: "3.12" | |
comms-type: l | |
- os: ubuntu-latest | |
mpi-version: mpich | |
python-version: "3.10" | |
pydantic-version: "1.10.17" | |
comms-type: m | |
- os: ubuntu-latest | |
mpi-version: mpich | |
python-version: "3.10" | |
pydantic-version: "1.10.17" | |
comms-type: l | |
env: | |
HYDRA_LAUNCHER: "fork" | |
TERM: xterm-256color | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Setup conda - Python ${{ matrix.python-version }} | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
activate-environment: condaenv | |
miniconda-version: "latest" | |
python-version: ${{ matrix.python-version }} | |
channels: conda-forge | |
channel-priority: flexible | |
auto-update-conda: true | |
- name: Force-update certifi | |
run: | | |
python --version | |
pip install -I --upgrade certifi | |
- name: Install Ubuntu compilers | |
if: matrix.os == 'ubuntu-latest' | |
run: conda install gcc_linux-64 | |
# Roundabout solution on macos for proper linking with mpicc | |
- name: Install macOS compilers | |
if: matrix.os == 'macos-latest' | |
run: | | |
conda install clang_osx-64 | |
- name: Install mpi4py and MPI from conda | |
run: | | |
conda install mpi4py ${{ matrix.mpi-version }} | |
- name: Install generator dependencies | |
run: | | |
conda env update --file install/gen_deps_environment.yml | |
- name: Install gpcam | |
if: matrix.python-version != '3.12' | |
run: | | |
pip install gpcam | |
- name: Install surmise | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
pip install --upgrade git+https://github.com/bandframework/surmise.git | |
- name: Install generator dependencies for Ubuntu tests | |
if: matrix.os == 'ubuntu-latest' && matrix.python-version != '3.12' | |
run: | | |
sudo apt-get install bc | |
pip install -r install/ubuntu_no312.txt | |
pip install Tasmanian --user | |
- name: Install Balsam on Pydantic 1 | |
if: matrix.pydantic-version == '1.10.17' | |
run: | | |
conda install pyzmq | |
git clone https://github.com/argonne-lcf/balsam.git | |
sed -i -e "s/pyzmq>=22.1.0,<23.0.0/pyzmq>=23.0.0,<24.0.0/" ./balsam/setup.cfg | |
cd balsam; pip install -e .; cd .. | |
- name: Install other testing dependencies | |
run: | | |
conda install octave | |
pip install -r install/testing_requirements.txt | |
pip install -r install/misc_feature_requirements.txt | |
source install/install_ibcdfo.sh | |
- name: Install libEnsemble, flake8, lock environment | |
run: | | |
pip install pydantic==${{ matrix.pydantic-version }} | |
pip install -e . | |
flake8 libensemble | |
- name: Remove test for persistent Tasmanian, Surmise on Python 3.12 | |
if: matrix.python-version >= '3.12' | |
run: | | |
rm ./libensemble/tests/regression_tests/test_persistent_tasmanian.py | |
rm ./libensemble/tests/regression_tests/test_persistent_tasmanian_async.py | |
rm ./libensemble/tests/regression_tests/test_persistent_surmise_calib.py | |
rm ./libensemble/tests/regression_tests/test_persistent_surmise_killsims.py | |
- name: Install redis/proxystore on Pydantic 2 | |
if: matrix.pydantic-version == '2.8.2' | |
run: | | |
pip install redis | |
pip install proxystore==0.7.0 | |
- name: Remove proxystore test on Pydantic 1 | |
if: matrix.pydantic-version == '1.10.17' | |
run: | | |
rm ./libensemble/tests/regression_tests/test_proxystore_integration.py | |
- name: Remove Balsam/Globus-compute tests on Pydantic 2 | |
if: matrix.pydantic-version == '2.8.2' | |
run: | | |
rm ./libensemble/tests/unit_tests/test_ufunc_runners.py | |
rm ./libensemble/tests/unit_tests/test_executor_balsam.py | |
- name: Start Redis | |
if: matrix.os == 'ubuntu-latest' | |
uses: supercharge/[email protected] | |
with: | |
redis-version: 7 | |
- name: Run extensive tests | |
run: | | |
./libensemble/tests/run_tests.py -e -${{ matrix.comms-type }} | |
- name: Merge coverage | |
run: | | |
mv libensemble/tests/.cov* . | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@v5 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
spellcheck: | |
name: Spellcheck release branch | |
if: contains(github.base_ref, 'develop') | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: crate-ci/[email protected] |