Merge pull request #46 from agduncan94/feature/html-features

change to html feature
LincolnSteinLab · Oct 29, 2019 · c46c798 · c46c798
2 parents ef82fdf + b2954f1
commit c46c798
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Showing 5 changed files with 13 additions and 13 deletions.
diff --git a/README.md b/README.md
@@ -92,7 +92,7 @@ Example Track:
 ```
 [tracks.ICGC_Genes]
 storeClass=icgc-viewer/Store/SeqFeature/Genes
-type=icgc-viewer/View/Track/CanvasVariants
+type=icgc-viewer/View/Track/GeneTrack
 key=ICGC_Genes
 unsafePopup=true
 ```
@@ -131,7 +131,7 @@ Example Track:
 ```
 [tracks.ICGC_Mutations]
 storeClass=icgc-viewer/Store/SeqFeature/SimpleSomaticMutations
-type=icgc-viewer/View/Track/CanvasVariants
+type=icgc-viewer/View/Track/SSMTrack
 key=ICGC_Mutations
 unsafePopup=true
 ```

diff --git a/data/advanced-tracks.conf b/data/advanced-tracks.conf
@@ -1,6 +1,6 @@
 [tracks.ICGC_Mutations]
 storeClass=icgc-viewer/Store/SeqFeature/SimpleSomaticMutations
-type=icgc-viewer/View/Track/CanvasVariants
+type=icgc-viewer/View/Track/SSMTrack
 key=ICGC_Mutations
 filters={"mutation":{"functionalImpact":{"is":["High"]}}}
 size=300
@@ -9,7 +9,7 @@ unsafePopup=true
 
 [tracks.ICGC_Genes]
 storeClass=icgc-viewer/Store/SeqFeature/Genes
-type=icgc-viewer/View/Track/CanvasVariants
+type=icgc-viewer/View/Track/GeneTrack
 key=ICGC_Genes
 filters={"gene":{"type":{"is":["protein_coding"]}}}
 size=400
@@ -18,7 +18,7 @@ unsafePopup=true
 
 [tracks.ICGC_Genes_donor_DO229446]
 storeClass=icgc-viewer/Store/SeqFeature/Genes
-type=icgc-viewer/View/Track/CanvasVariants
+type=icgc-viewer/View/Track/GeneTrack
 key=ICGC_Genes_donor_DO229446
 donor=DO229446
 filters={"gene":{"type":{"is":["protein_coding"]}}}
@@ -27,7 +27,7 @@ unsafePopup=true
 
 [tracks.ICGC_SSMs_donor_DO229446]
 storeClass=icgc-viewer/Store/SeqFeature/SimpleSomaticMutations
-type=icgc-viewer/View/Track/CanvasVariants
+type=icgc-viewer/View/Track/SSMTrack
 key=ICGC_SSMs_donor_DO229446
 donor=DO229446
 filters={"mutation":{"functionalImpact":{"is":["High"]}}}

diff --git a/data/tracks.conf b/data/tracks.conf
@@ -6,7 +6,7 @@ metadata.datatype=SSM
 unsafePopup=true
 
 [tracks.ICGC_Genes]
-storeClass=icgc-viewer/Store/SeqFeature/icgcGenes
+storeClass=icgc-viewer/Store/SeqFeature/Genes
 type=icgc-viewer/View/Track/GeneTrack
 key=ICGC_Genes
 metadata.datatype=Gene

diff --git a/icgc-viewer/js/View/Track/GeneTrack.js b/icgc-viewer/js/View/Track/GeneTrack.js
@@ -1,16 +1,16 @@
 define(
     [
         "dojo/_base/declare",
-        "JBrowse/View/Track/CanvasFeatures",
+        "JBrowse/View/Track/HTMLFeatures",
         'JBrowse/View/Track/_ExportMixin',
         'dojo/dom-construct'
     ],
    function(
        declare,
-       CanvasFeatures,
+       HTMLFeatures,
        ExportMixin,
        domConstruct) {
-   return declare([ CanvasFeatures, ExportMixin ], {
+   return declare([ HTMLFeatures, ExportMixin ], {
 
         _exportFormats: function() {
             return [

diff --git a/icgc-viewer/js/View/Track/SSMTrack.js b/icgc-viewer/js/View/Track/SSMTrack.js
@@ -1,16 +1,16 @@
 define(
     [
         "dojo/_base/declare",
-        "JBrowse/View/Track/CanvasFeatures",
+        "JBrowse/View/Track/HTMLFeatures",
         'JBrowse/View/Track/_ExportMixin',
         'dojo/dom-construct'
     ],
    function(
        declare,
-       CanvasFeatures,
+       HTMLFeatures,
        ExportMixin,
        domConstruct) {
-   return declare([ CanvasFeatures, ExportMixin ], {
+   return declare([ HTMLFeatures, ExportMixin ], {
 
         _exportFormats: function() {
             return [