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ALM Tutorial

This tutorial demonstrate how to build and use data pipelines using DataJoint for Python. As an example, we use the ALM-1 dataset from http://crcns.org/data-sets/motor-cortex/alm-1/

Support

For any questions and requests, please subscribe to https://mesoscaleactivitymap.slack.com and post them there.

You may also submit issues through the repo issue tracker https://github.com/mesoscale-activity-map/ALM-tutorial/issues

General DataJoint documentatin is available here:

Online viewing

This tutorial comprises a series of Jupyter notebooks. These can be viewed online publicly at http://nbviewer.jupyter.org/github/mesoscale-activity-map/

Obtain credentials

All MAP pipelines are hosted at mesoscale-activity.datajoint.io

To work with the data interactively, please obtain a username and password and keep them secure. Please contact support through Slack.

Setup

The instructions for downloading the DataJoint library are available here: http://docs.datajoint.io/setup/Install-and-connect.html

Please contact support through Slack if you run into any trouble.

Current ERD of Arseny's schema (work in progress)

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  • Jupyter Notebook 82.1%
  • MATLAB 14.9%
  • Python 3.0%