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21 Open 3 Closed
21 Open 3 Closed
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Issues list

Failed to select autosomal SNPs only (QC Step 3)
#25 opened Jan 9, 2024 by Franklin593
Some questions about qqplots
#24 opened Sep 9, 2023 by Isa0529
why individual 13291 NA07045 in 0.2_low_call_rate_pihat.txt
#23 opened Aug 21, 2023 by usernicai
1
I have failed convert vcf to Plink(v1.07) format
#20 opened Sep 14, 2022 by Wusun5
Failed to open snp_1_22.txt
#19 opened Jun 27, 2022 by TareqAldirawi
Error: 'legend' is of length 0
#18 opened May 9, 2022 by Adonyo-Emmanuel
3
ftp vs https in downloading 1000 genome vcf file in Step 2_Population_stratification
#17 opened Apr 13, 2022 by SarojaSomu
1
Permutation step, Error? or My fault?
#16 opened Mar 15, 2022 by zzjl20
How to Create HapMap_3_r3 ( bim, bed and fam )
#14 opened Feb 11, 2022 by Kiran936
1
data for 0.2_low_call_rate_pihat.txt
#13 opened Nov 18, 2021 by Manonanthini
2
Any plan to have an update to GWA_tutorial?
#12 opened Oct 8, 2021 by Shicheng-Guo
1
Quantitative phenotypes QC
#11 opened Aug 7, 2021 by elssam
Miss MDS_merge2.mds file
#10 opened Mar 23, 2021 by Mohammad-Vahed
1
Could you please tell me how to "inversion.txt" in the 1_QC_GWAS folder
#9 opened Feb 16, 2021 by 8865225
2
How to confirm which sub has the lower call rate of each pair that I should remove
#8 opened Nov 26, 2020 by tongwang-en
The system cannot find the path specified.
#7 opened Aug 13, 2020 by green-ear-rabbit
.vcf has fewer tokens than expected error
#5 opened Oct 18, 2019 by sererenaa
8
Can you explain more about the "inversion.txt" in the 1_QC_GWAS folder
#4 opened Oct 12, 2019 by ulysses1881826
8
p-value threshold for HWE deviation
#3 opened Oct 2, 2018 by blueskypie
1
controlling population stratification
#2 opened Oct 2, 2018 by blueskypie
1
convert vcf to plink step missing id setting
#1 opened Sep 7, 2018 by trptyrphe11
4
ProTip! Follow long discussions with comments:>50.