In this repository the R-Scrips and Rmarkdown reports of Prieto-Garcia et al. 2023 are provided.
R-Scripts and Rmarkdown reports have to be executed in the following order:
- 1_modulizer_output_to_rds.R
- 1_effect_of_USP39_KD_on_splicing.Rmd
- 3_mergeBigWig_iCLIP.R
- 4_get_read_support_for_A5SS_events.R
- 2_RNAmaps_and_features.html
- 3_generate_peptide_and_adjusted_SWISSPROT_sequences.Rmd
- 5_adjust_IDs_for_FAS_analysis.R
- 4_FASscore_analysis.Rmd
The rendered HTML-Reports can be accessed at https://mchicken1988.github.io/Prieto_Garcia_et_al_2023/