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feat: memote annotation and consistency scoring #8

Merged
merged 43 commits into from
May 10, 2023
Merged

feat: memote annotation and consistency scoring #8

merged 43 commits into from
May 10, 2023

Commits on Mar 6, 2023

  1. feat: example on how to integrate some tests from Memote #3

    @famosab @mihai-sysbio
    famosab authored and mihai-sysbio committed Mar 6, 2023
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  2. feat: memote integration, reqs update

    @famosab @mihai-sysbio
    famosab authored and mihai-sysbio committed Mar 6, 2023
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  3. feat: memote, make errors available

    @famosab @mihai-sysbio
    famosab authored and mihai-sysbio committed Mar 6, 2023
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  4. feat: restructure memote as valid return

    @famosab @mihai-sysbio
    famosab authored and mihai-sysbio committed Mar 6, 2023
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  5. feat: store memote score for annotation and consistency

    @mihai-sysbio
    mihai-sysbio committed Mar 6, 2023
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  6. fix: handle job matrix as workflow output

    @mihai-sysbio
    mihai-sysbio committed Mar 6, 2023
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  7. fix: typo

    @mihai-sysbio
    mihai-sysbio committed Mar 6, 2023
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  8. fix: matrix format for workflow strategy

    @mihai-sysbio
    mihai-sysbio committed Mar 6, 2023
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  9. chore: update gh workflow dependency

    @mihai-sysbio
    mihai-sysbio committed Mar 6, 2023
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  10. fix: graphql releases sorted by most recent

    @mihai-sysbio
    mihai-sysbio committed Mar 6, 2023
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  11. update validation results for SysBioChalmers/yeast-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 6, 2023
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  12. fix: use right var in workflow results

    @mihai-sysbio
    mihai-sysbio committed Mar 6, 2023
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  13. update validation results for SysBioChalmers/Human-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 6, 2023
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  14. update validation results for SysBioChalmers/Fruitfly-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 6, 2023
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  15. feat: use Docker image of Memote

    @mihai-sysbio
    mihai-sysbio committed Mar 6, 2023
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  16. feat: use custom Docker image of Memote

    @mihai-sysbio
    mihai-sysbio committed Mar 6, 2023
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Commits on Mar 8, 2023

  1. fix: pass gh token to container

    @mihai-sysbio
    mihai-sysbio committed Mar 8, 2023
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Commits on Mar 14, 2023

  1. chore: cleanup

    @mihai-sysbio
    mihai-sysbio committed Mar 14, 2023
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  2. chore: remove duplicate file

    @mihai-sysbio
    mihai-sysbio committed Mar 14, 2023
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  3. fix: check file exists and size

    @mihai-sysbio
    mihai-sysbio committed Mar 14, 2023
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  4. fix: memote params

    @mihai-sysbio
    mihai-sysbio committed Mar 14, 2023
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  5. refactor: split cobra load

    @mihai-sysbio
    mihai-sysbio committed Mar 14, 2023
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  6. fix: check if requests succeed

    @mihai-sysbio
    mihai-sysbio committed Mar 14, 2023
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  7. fix: memote test listing

    @mihai-sysbio
    mihai-sysbio committed Mar 14, 2023
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  8. Merge pull request #9 from MetabolicAtlas/feat/memote-docker 

    feat: use dockerized memote setup
    @mihai-sysbio
    mihai-sysbio authored Mar 14, 2023
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  9. update index of standard-GEMs

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  10. update validation results for SysBioChalmers/yeast-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  11. update validation results for SysBioChalmers/Human-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  12. update validation results for SysBioChalmers/Fruitfly-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  13. update validation results for SysBioChalmers/Mouse-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  14. update validation results for SysBioChalmers/Sco-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  15. update validation results for SysBioChalmers/Zebrafish-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  16. update validation results for SysBioChalmers/Worm-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  17. update validation results for haowang-bioinfo/Ecoli-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  18. update validation results for tibbdc/vna-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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  19. update validation results for SysBioChalmers/Rat-GEM

    @mihai-sysbio @github-actions
    mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
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Commits on Mar 17, 2023

  1. chore: increate number of validated releases

    @mihai-sysbio
    mihai-sysbio committed Mar 17, 2023
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  2. update validation results for SysBioChalmers/yeast-GEM

    @mihai-sysbio
    mihai-sysbio committed Mar 17, 2023
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  3. update validation results for SysBioChalmers/Human-GEM

    @mihai-sysbio
    mihai-sysbio committed Mar 17, 2023
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  4. update validation results for SysBioChalmers/Fruitfly-GEM

    @mihai-sysbio
    mihai-sysbio committed Mar 17, 2023
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  5. update validation results for SysBioChalmers/Sco-GEM

    @mihai-sysbio
    mihai-sysbio committed Mar 17, 2023
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  6. update validation results for SysBioChalmers/Zebrafish-GEM

    @mihai-sysbio
    mihai-sysbio committed Mar 17, 2023
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  7. update validation results for SysBioChalmers/Mouse-GEM

    @mihai-sysbio
    mihai-sysbio committed Mar 17, 2023
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