Very NICE ! This repository was forked from https://github.com/evenhuis/omero-user-scripts. Some fixes were applied to make the scripts work with the omero instance at Max Planck Institute for Evolutionary Biology. A short tutorial on its usage in combination with the omero.forms plugin was posted here .
This repository provides five scripts:
01-KeyVal_from_Description.py: Parses a Dataset/Project/Screen description and converts key:value pairs into map annotations in the same container.01-KeyVal_to_csv.py: Converts a dataset map annotation into a table with one record for every image in the dataset. Columns are named according to map annotation keys. The first column contains the image filename (or id???)03-KeyVal_from_csv.py: Parses a given csv table attachment and converts each record into a map annotation for the image identified via the entry in the first column (filename or image id).04-Remove_KeyVal.py: Removes all map annotations from a dataset and all contained images.05-KeyVal_from_Filename.py: Creates image map annotation by tokenizing the filename.
The scripts must be placed in the OMERODIR/lib/scripts/omero directory of your
omero installation, preferrentially in a seperatate subdirectory. OMERODIR
refers to the root directory of you omero server. If you followed the
installation procedures, you should have the $OMERODIR environment variable set.
NOTE: The original readme of this repository moved here.