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@Murali-group

T. M. Murali's Research Group at Virginia Tech

Computational Systems Biology

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  1. Beeline Beeline Public

    BEELINE: evaluation of algorithms for gene regulatory network inference

    Python 178 53

  2. SARS-CoV-2-network-analysis SARS-CoV-2-network-analysis Public

    Software framework for analysis of SARS-CoV-2 molecular networks

    Jupyter Notebook 6 3

  3. GraphSpace GraphSpace Public

    The interactive graph sharing website.

    Python 30 41

  4. PathLinker PathLinker Public

    Connect the dots in networks.

    Python 18 10

  5. BoolODE BoolODE Public

    Git Repo for simulating Boolean Models

    Python 33 16

  6. PathLinker-Cytoscape PathLinker-Cytoscape Public

    Cytoscape plugin for PathLinker

    Java 3 5

Repositories

Showing 10 of 23 repositories
  • Beeline Public

    BEELINE: evaluation of algorithms for gene regulatory network inference

    Murali-group/Beeline’s past year of commit activity
    Python 178 GPL-3.0 53 34 19 Updated Dec 6, 2024
  • graph-split Public

    A module to split a graph in different ways (for deep learning applications)

    Murali-group/graph-split’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 25, 2024
  • BoolODE Public

    Git Repo for simulating Boolean Models

    Murali-group/BoolODE’s past year of commit activity
    Python 33 GPL-3.0 16 9 8 Updated Jun 11, 2024
  • ICoN Public

    Integration using Co-attention across Biological Networks

    Murali-group/ICoN’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Mar 7, 2024
  • GraphSpace Public

    The interactive graph sharing website.

    Murali-group/GraphSpace’s past year of commit activity
    Python 30 GPL-2.0 41 82 (1 issue needs help) 22 Updated Aug 6, 2023
  • halp Public

    Hypergraph Algorithms Package

    Murali-group/halp’s past year of commit activity
    Python 95 GPL-3.0 21 4 2 Updated Jul 6, 2023
  • annotation_prediction Public

    Algorithms for predicting gene and protein annotations, e.g., to the GO and to the HPO.

    Murali-group/annotation_prediction’s past year of commit activity
    Python 2 GPL-3.0 4 0 2 Updated Jul 6, 2023
  • SARS-CoV-2-network-analysis Public

    Software framework for analysis of SARS-CoV-2 molecular networks

    Murali-group/SARS-CoV-2-network-analysis’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 3 6 4 Updated Jul 6, 2023
  • tox_signaling_networks Public

    Code for building and evaluating toxicant signaling networks.

    Murali-group/tox_signaling_networks’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 5, 2023
  • BeeHive Public

    A general platform for multiple types of network biology workflows

    Murali-group/BeeHive’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Dec 15, 2022
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