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  1. BF528_Final-project BF528_Final-project Public

    Conducted scRNA-Seq analysis on human samples, performing differential expression, quality control, exploratory data analysis, and functional enrichment to compare wild-type and knock-out conditions.

    HTML

  2. HuntOmics-Explorer HuntOmics-Explorer Public

    Developed an R Shiny app for analyzing RNA-Seq data from Huntington's Disease studies, featuring sample exploration, differential expression analysis, correlation networks, and gene set enrichment.

    R

  3. BF591 BF591 Public

    Contains assignments from the BF591 course, focusing on R programming for biological sciences, covering topics like data visualization, statistical analysis, and bioinformatics workflows.

    HTML

  4. BF550-Final-Project BF550-Final-Project Public

    Replicated figures from a study on gene signatures in skeletal muscle cells using single-cell RNA-Seq data, employing hierarchical clustering and PCA analysis.

    Jupyter Notebook

  5. cEpiReg-Database cEpiReg-Database Public

    Constructed a comprehensive database elucidating the intricate regulatory mechanisms underlying Alzheimer's Disease genetics, integrating scRNA-seq, scATAC-seq, CHIP-seq, CUT&RUN and eQTL data to i…

    HTML

  6. BF528 BF528 Public

    Contains assignments from the BF528 course, focusing on applications in translational bioinformatics, including end-to-end analyses of various omics data and bioinformatics workflows using tools li…

    HTML