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20 Open 319 Closed
20 Open 319 Closed
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Issues list

agat_sp_statistics.pl for outputing whole distribution results as csv format
#507 opened Oct 29, 2024 by Jasminefyh
1
agat_sp_flag_premature_stop_codons.pl mostly flags genes without premature stop codons
#504 opened Oct 17, 2024 by JWDebler
4
agat_convert_minimap2_bam2gff.pl handle Insertion and deletion
#503 opened Oct 8, 2024 by tjwu
Failed execution on Singularity
#500 opened Oct 7, 2024 by jyw-atgithub
1
Error with GFF input file when using agat_sp_add_introns.pl and agat_convert_sp_gxf2gxf.pl
#493 opened Sep 25, 2024 by mspopecki
1
The agat_sp_filter_feature_by_attribute_value.pl installed by conda is an old version
#492 opened Sep 19, 2024 by dongdongdong0203
1
agat_sp_extract_sequences.pl Could not open index file but it exists
#479 opened Aug 30, 2024 by hans-vg
1
Some transcripts are missing agat_convert_sp_gxf2gxf.pl
#478 opened Aug 22, 2024 by IrinaVKuznetsova
1
How to merge two genes with overlapping positions but no overlapping CDS?
#468 opened Jun 20, 2024 by binzhengbin
9
agat_sp_merge_annotations.pl output incompatible with cellranger
#457 opened May 6, 2024 by LliliansCalvo
32
agat_sp_extract_sequences.pl: support for multicistronic transcripts.
#451 opened Apr 8, 2024 by jdcla
agat_sp_extract_sequences.pl does not incorporate CDS feature ID in headers enhancement New feature or request
#450 opened Apr 8, 2024 by jdcla
5
AGAT not working in perl 5.38 bug Something isn't working help wanted Extra attention is needed
#416 opened Jan 12, 2024 by kgaisser
7
AGAT compatible with Perl 5.36 ? help wanted Extra attention is needed
#392 opened Aug 23, 2023 by eylenth
8
Tiny bug - gtf output header
#386 opened Aug 1, 2023 by SheepwormJM
2
add a check in OmniscientI check_identical_loci
#334 opened Feb 17, 2023 by Juke34
URL Escape Characters Converted
#250 opened May 6, 2022 by skchronicles
3
Creating a Hints file for use in Augustus from a gff file help wanted Extra attention is needed
#177 opened Sep 19, 2021 by sanyalab
6
Venn diagramm enhancement New feature or request
#81 opened Oct 19, 2020 by mictadlo
agat_sp_statistics.pl add an option to collapse overlapping part enhancement New feature or request
#26 opened Mar 3, 2020 by Juke34
ProTip! no:milestone will show everything without a milestone.