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Merge latest mom-ocean main #254

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merged 88 commits into from
Aug 18, 2023
Merged

Merge latest mom-ocean main #254

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3037100
Document and unit test for mu(z) in MLE parameterization
adcroft Jun 2, 2022
5d5df20
Adds the Bodner et al. 2023 version of MLE
adcroft Jun 8, 2022
8c46575
Add Bodner MLE testing
marshallward Apr 19, 2023
76634ef
+Add Pa_to_RL2_T2 and Pa_to_RLZ_T2 to US type
Hallberg-NOAA Mar 14, 2023
6d08e02
Use US%Pa_to_RL2_T2 to rescale pressures
Hallberg-NOAA Mar 14, 2023
c32be04
+Add runtime parameter TAUX_MAGNITUDE
Hallberg-NOAA Mar 14, 2023
f9897c8
Correct MLD_EN_VALS rescaling
Hallberg-NOAA Mar 23, 2023
7225642
Add better error handling to read_var_sizes
Hallberg-NOAA Mar 30, 2023
4038d69
Checksum unrescaled non-Boussinesq thicknesses
Hallberg-NOAA Apr 7, 2023
6547b2a
(*)Use conversion factor for masscello diagnostic
Hallberg-NOAA Mar 11, 2023
1444864
+Remove rescaling factors from restart files
Hallberg-NOAA Feb 1, 2023
f48bce7
+Add MOM_EOS_Wright_Full
Hallberg-NOAA Feb 8, 2023
0f72e7f
Fix and tidy Wright_EOS API documentation
Hallberg-NOAA Feb 11, 2023
4d74bfd
(*)Rearranged parentheses in MOM_EOS_Wright_full
Hallberg-NOAA Feb 11, 2023
f650db6
+Created the new module MOM_EOS_Wright_red
Hallberg-NOAA Feb 13, 2023
5dffa7d
*Fix bug in calculate_spec_vol_linear with spv_ref
Hallberg-NOAA Feb 14, 2023
71e0bb7
+Add EOS_unit_tests
Hallberg-NOAA Feb 14, 2023
ca20e2f
Fix doxygen labels in EOS_Wright_full and _red
Hallberg-NOAA Feb 15, 2023
52f5678
*+NEMO equation of state self-consistency
Hallberg-NOAA Feb 15, 2023
419085d
+Add calculate_density_second_derivs_UNESCO
Hallberg-NOAA Feb 16, 2023
b4be596
(*)+Added calc_density_second_derivs_wright_buggy
Hallberg-NOAA Feb 16, 2023
332b7e3
*Refactor MOM_EOS_UNESCO.F90
Hallberg-NOAA Mar 4, 2023
22729a0
*Refactor MOM_EOS_NEMO.F90
Hallberg-NOAA Mar 4, 2023
493cfe5
+Add MOM_EOS_Roquet_SpV.F90
Hallberg-NOAA Mar 4, 2023
b5b69e7
+Add MOM_EOS_Jackett06.F90
Hallberg-NOAA Mar 6, 2023
b8a74cc
*+Add calculate_specvol_derivs_UNESCO
Hallberg-NOAA Mar 6, 2023
7f164da
+Add EOS_fit_range and analogs for each EoS
Hallberg-NOAA Mar 10, 2023
3731c27
Do not include MOM_memory.h in EoS modules
Hallberg-NOAA Mar 12, 2023
ed4623b
*Refactor calculate_specific_vol_wright_full
Hallberg-NOAA Mar 12, 2023
4a3b6ac
+Renamed MOM_EOS_NEMO to MOM_EOS_Roquet_rho
Hallberg-NOAA Mar 15, 2023
ae46d7d
*Avoid re-rescaling T and p in MOM_EOS_Roquet_rho
Hallberg-NOAA Mar 15, 2023
28f97bb
+Add calculate_TFreeze_TEOS_poly
Hallberg-NOAA Mar 16, 2023
9e28271
+*Add MOM_temperature_convert.F90
Hallberg-NOAA Mar 20, 2023
b832f2c
Update _Equation_of_State.dox
Hallberg-NOAA Mar 20, 2023
433ac30
+Eliminate use_TEOS arg to cons_temp_to_pot_temp
Hallberg-NOAA Mar 20, 2023
ed58758
+Make calculate_density_array private
Hallberg-NOAA Mar 23, 2023
ded1382
+Rename WRIGHT_RED to WRIGHT_REDUCED
Hallberg-NOAA Apr 22, 2023
63561c1
Removal of FMS1 I/O from FMS2 I/O infra
marshallward Feb 23, 2023
c9b920b
Remove FMS1 calls from MOM_domains_infra
marshallward Mar 30, 2023
f5423cb
Add .nc extension to ALE Vertical_coordinate.
marshallward Apr 2, 2023
9177d65
Merge branch 'main' into dev/gfdl
marshallward May 5, 2023
82f750e
+Remove optional argument eta_to_m from find_eta
Hallberg-NOAA Apr 4, 2023
3b11e43
+Initialize thicknesses in height units
Hallberg-NOAA Apr 7, 2023
3be5d3a
+Add the new overloaded interface dz_to_thickness
Hallberg-NOAA Apr 7, 2023
fb5f4d7
(*)Improve non-Boussinesq initialization
Hallberg-NOAA Apr 8, 2023
debe45e
(*)Use dz_to_thickness in 4 user modules
Hallberg-NOAA Apr 8, 2023
89f91bd
Update the Gitlab .testing modules for c5
marshallward May 12, 2023
50d8bda
POSIX: generic wrappers for all setjmp.h symbols
marshallward Dec 10, 2022
0fa10ad
Autoconf: External FMS build configuration
marshallward May 8, 2023
501fcff
Autoconf: Explicit MOM_memory.h configuration
marshallward May 11, 2023
b32b2ed
Profiling: subparameter parser support
marshallward Apr 21, 2023
57b7a91
Merge branch 'mle-bodner-submit' into pr/352-merge
marshallward May 30, 2023
53e9361
+*Redefine GV%Angstrom_H in non-Boussinesq mode
Hallberg-NOAA May 14, 2023
1faa9ab
+Set_interp_answer_date and REGRIDDING_ANSWER_DATE
Hallberg-NOAA May 17, 2023
e672b98
*+Revise non-Boussinesq find_coupling_coef calcs
Hallberg-NOAA May 26, 2023
edb22ec
+Code to calculate layer averaged specific volumes
Hallberg-NOAA Apr 29, 2023
e86b35a
+Add thickness_to_dz and calc_derived_thermo
Hallberg-NOAA Apr 29, 2023
e0021fc
wave structure computation into wave_speeds
Apr 21, 2023
e45b983
remove wave_structure broken code
Apr 25, 2023
d0f7b29
Autoconf: Better Unicode Python support in makedep
marshallward May 22, 2023
b075794
Autoconf: Fix Python test and allow configuration
marshallward May 22, 2023
cb4574b
Fix PGI runtime issue with class(*)
nikizadehgfdl Mar 29, 2023
273da2f
Use fileset rather than threading for decompositon
marshallward Jun 9, 2023
6038735
FMS2 interpolation ID replaced with derived type
marshallward May 31, 2023
1c6dd7f
FMS2: Remove MPP-based axis data access
marshallward Jun 7, 2023
e3c82d2
FMS2: Update time_interp_external functions
marshallward Jun 7, 2023
dd1ee34
FMS2: Case-insensitive init_external_field
marshallward Jun 16, 2023
932816e
Implementation of ZB sheme
Pperezhogin Apr 12, 2023
1a38b88
Filters for ZB. Regression changed (FGR changed to amplitude)
Pperezhogin Apr 12, 2023
e4db92d
Rotate test is passed. Regression changed (order of operatrions)
Pperezhogin Apr 12, 2023
475212f
ZB submitted via PR
Pperezhogin Apr 12, 2023
7bb452b
ZB: Response to the code review
Pperezhogin Apr 12, 2023
1f0c92f
Update icebergs source path in nolibs build
marshallward Jun 26, 2023
201e705
+Make units argument mandatory for get_param_real
Hallberg-NOAA Jan 4, 2023
cc1784c
github workflows: update to use actions/checkout@v3
adcroft Dec 12, 2022
042eee7
FMS2: Safe inspection of unlimited dim name
marshallward Jun 23, 2023
cd16647
+Refactor internal_tides interface
Hallberg-NOAA Jun 20, 2023
70a75ff
+Add fluxes%tau_mag and forces%tau_mag
Hallberg-NOAA Jun 21, 2023
b0289fe
*+Fix problems in mixedlayer_restrat_Bodner
Hallberg-NOAA Jun 24, 2023
d44c228
FMS2: New interface to set/nullify_domain
marshallward Jun 29, 2023
859ac15
*Correct nuopc_cap tau_mag bug
Hallberg-NOAA Jul 10, 2023
0bcf031
Fms2 io read3d slice (#399)
MJHarrison-GFDL Jul 20, 2023
5bd66e0
mrege 1603 and resolve conflicts
alperaltuntas Jul 28, 2023
2751afa
Merge branch 'pr1603b' into merge_1603
alperaltuntas Jul 28, 2023
b61b29e
Merge pull request #1603 from NOAA-GFDL/gfdl-candidate-2023-07-03
marshallward Aug 1, 2023
82acb2f
Update MOM_variables.F90
mathomp4 Aug 2, 2023
2dd99f8
Merge pull request #1605 from GEOS-ESM/mathomp4-patch-1
marshallward Aug 11, 2023
d8be5a4
Merge branch 'main' into merge_main_2dd99f8
alperaltuntas Aug 18, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/coupled-api.yml
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working-directory: .testing

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2 changes: 1 addition & 1 deletion .github/workflows/documentation-and-style.yml
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runs-on: ubuntu-latest

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2 changes: 1 addition & 1 deletion .github/workflows/macos-regression.yml
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2 changes: 1 addition & 1 deletion .github/workflows/macos-stencil.yml
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2 changes: 1 addition & 1 deletion .github/workflows/other.yml
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2 changes: 1 addition & 1 deletion .github/workflows/perfmon.yml
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2 changes: 1 addition & 1 deletion .github/workflows/regression.yml
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2 changes: 1 addition & 1 deletion .github/workflows/stencil.yml
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working-directory: .testing

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submodules: recursive

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