Skip to content

Commit

Permalink
replace reference with their doi links
Browse files Browse the repository at this point in the history
fixes #107
  • Loading branch information
cpauvert committed Feb 15, 2024
1 parent f50fb60 commit adfb935
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions docs/_Research-Data-Management/13-data-qc.md
Original file line number Diff line number Diff line change
Expand Up @@ -170,7 +170,7 @@ Legend:
- **source**: Dim. reduction embedding, negative control study
- **possible reason(s)**: use raw data for tSNE/UMAP
- **solution/measure**: use a significant portion of PC from the PCA as input for tSNE/UMAP
3. "The first two principle components were used to perform a tSNE" [https://www.science.org/doi/full/10.1126/science.aag3009](https://www.science.org/doi/full/10.1126/science.aag3009)
3. "The first two principle components were used to perform a tSNE" <https://doi.org/10.1126/science.aag3009>
- **source**: Dim. reduction embedding, negative control study
- **possible reason(s)**: use only 2 PC from the PCA for the tSNE/UMAP projection
- **solution/measure**: use a significant portion of PC from the PCA as input for tSNE/UMAP
Expand All @@ -188,7 +188,7 @@ Legend:
- **solution/measure**: use a population size cutoff or state the number
2. some genes look like dates (1-Mar,...)
- **source**: seurat/deseq, negative control study
- **possible reason(s)**: some genes can be interpreted as dates when using excel for data handling [https://www.science.org/doi/10.1126/science.aah4573](https://www.science.org/doi/10.1126/science.aah4573)
- **possible reason(s)**: some genes can be interpreted as dates when using excel for data handling <https://doi.org/10.1126/science.aah4573>
- **solution/measure**: never ever use excel or at least make sure that cell type is not "AUTO"

# Further resources
Expand Down

0 comments on commit adfb935

Please sign in to comment.