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* Changed GHA R-CMD-check from release to standard * Updated GHA pkgdown * Required R version >= 4.4.0 * Updated title case, separate URLs with comma * Updated medrxiv urls * Increment version number to 0.1.3 * Removed old empty news entries * Regenerated docs after fixing urls * Removed 'oldrel-1' ubuntu rcmdcheck until R 4.5.0 * Added .DS_Store to .Rbuildignore
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,6 +1,7 @@ | ||
| ^renv$ | ||
| ^renv\.lock$ | ||
| ^\.Rprofile$ | ||
| ^\.DS_Store$ | ||
| ^GeoTox\.Rproj$ | ||
| ^\.Rproj\.user$ | ||
| ^LICENSE\.md$ | ||
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| @@ -0,0 +1,52 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: [main, master] | ||
| pull_request: | ||
| branches: [main, master] | ||
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| name: R-CMD-check.yaml | ||
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| permissions: read-all | ||
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| jobs: | ||
| R-CMD-check: | ||
| runs-on: ${{ matrix.config.os }} | ||
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| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
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| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - {os: macos-latest, r: 'release'} | ||
| - {os: windows-latest, r: 'release'} | ||
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | ||
| - {os: ubuntu-latest, r: 'release'} | ||
| #- {os: ubuntu-latest, r: 'oldrel-1'} | ||
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| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| R_KEEP_PKG_SOURCE: yes | ||
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| steps: | ||
| - uses: actions/checkout@v4 | ||
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| - uses: r-lib/actions/setup-pandoc@v2 | ||
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| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
| http-user-agent: ${{ matrix.config.http-user-agent }} | ||
| use-public-rspm: true | ||
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| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::rcmdcheck | ||
| needs: check | ||
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| - uses: r-lib/actions/check-r-package@v2 | ||
| with: | ||
| upload-snapshots: true | ||
| build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,16 +1,16 @@ | ||
| Package: GeoTox | ||
| Title: Spatiotemporal mixture risk assessment | ||
| Version: 0.1.2 | ||
| Title: Spatiotemporal Mixture Risk Assessment | ||
| Version: 0.1.3 | ||
| Authors@R: c( | ||
| person("Skylar", "Marvel", , "[email protected]", role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-2971-9743")), | ||
| person("David", "Reif", , "[email protected]", role = c("aut", "ctb"), comment = c(ORCID = "0000-0001-7815-6767")), | ||
| person("Kyle", "Messier", , "[email protected]", role = c("cre", "aut", "ctb"), comment = c(ORCID = "0000-0001-9508-9623")) | ||
| ) | ||
| Description: Connecting spatiotemporal exposure to individual and population-level risk via source-to-outcome continuum modeling. | ||
| License: MIT + file LICENSE | ||
| URL: https://niehs.github.io/GeoTox/ https://github.com/NIEHS/GeoTox | ||
| URL: https://niehs.github.io/GeoTox/, https://github.com/NIEHS/GeoTox | ||
| Depends: | ||
| R (>= 4.1.0) | ||
| R (>= 4.4.0) | ||
| Imports: | ||
| dplyr, | ||
| ggplot2, | ||
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