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remove no-longer-needed diagnostics.departures and rename jedi diagnostic files as jdiag* #241

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merged 4 commits into from
Dec 3, 2024
Merged

remove no-longer-needed diagnostics.departures and rename jedi diagnostic files as jdiag* #241

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51091fc
remove no-longer-needed diagnostics.departures and rename jedi diagno…
guoqing-noaa Nov 28, 2024
f2e0957
fix typos
guoqing-noaa Nov 28, 2024
0ec6eef
Merge the latest 'develop'
guoqing-noaa Dec 3, 2024
01294fc
update the newly-added fv3jedi yaml files to be consistent
guoqing-noaa Dec 3, 2024
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10 changes: 2 additions & 8 deletions rrfs-test/testinput/rrfs_fv3jedi_hyb_2022052619.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -109,7 +109,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: rass_tsen_obs_2022052619_hofx.nc4
obsfile: jdiag_rass_tsen_obs_2022052619.nc4
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simulated variables: [airTemperature]
observed variables: [airTemperature]
obs operator:
Expand All @@ -134,7 +134,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: rass_tsen_obs_2022052619_hofx.nc4
obsfile: jdiag_rass_tsen_obs_2022052619.nc4
simulated variables: [airTemperature]
observed variables: [airTemperature]
obs operator:
Expand Down Expand Up @@ -196,8 +196,6 @@ variational:
ntiles: 1
fieldsets:
- fieldset: DataFix/fix/dynamics_lam_cmaq.yaml
diagnostics:
departures: ombg
- ninner: 5
gradient norm reduction: 1e-60
geometry:
Expand All @@ -214,10 +212,6 @@ variational:
ntiles: 1
fieldsets:
- fieldset: DataFix/fix/dynamics_lam_cmaq.yaml
final:
diagnostics:
departures: oman

output:
filetype: fms restart
datapath: ./
Expand Down
6 changes: 3 additions & 3 deletions rrfs-test/testinput/rrfs_fv3jedi_letkf_2022052619.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: rass_tsen_obs_2022052619_hofx.nc4
obsfile: jdiag_rass_tsen_obs_2022052619.nc4
simulated variables: [airTemperature]
obs operator:
name: VertInterp
Expand Down Expand Up @@ -80,7 +80,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: sondes_tsen_obs_2022052619_hofx.nc4
obsfile: jdiag_sondes_tsen_obs_2022052619.nc4
simulated variables: [airTemperature]
obs operator:
name: VertInterp
Expand Down Expand Up @@ -112,7 +112,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: sondes_q_obs_2022052619_hofx.nc4
obsfile: jdiag_sondes_q_obs_2022052619.nc4
simulated variables: [specificHumidity]
obs operator:
name: VertInterp
Expand Down
37 changes: 16 additions & 21 deletions rrfs-test/testinput/rrfs_mpasjedi_2024052700_Ens3Dvar.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -16,8 +16,6 @@ variational:
deallocate non-da fields: true
interpolation type: unstructured
gradient norm reduction: 1e-3
diagnostics:
departures: ombg
ninner: 50
- geometry:
nml_file: ./namelist.atmosphere
Expand All @@ -26,9 +24,6 @@ variational:
interpolation type: unstructured
gradient norm reduction: 1e-3
ninner: 50
final:
diagnostics:
departures: oman
cost function:
cost type: 3D-Var
time window:
Expand Down Expand Up @@ -84,7 +79,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCAR_hofxs_airTemperature_133.nc4
obsfile: jdiag_AIRCAR_airTemperature_133.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -232,7 +227,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCAR_hofxs_uv_233.nc4
obsfile: jdiag_AIRCAR_uv_233.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -461,7 +456,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCAR_hofxs_specificHumidity_133.nc4
obsfile: jdiag_AIRCAR_specificHumidity_133.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -621,7 +616,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_airTemperature_130.nc4
obsfile: jdiag_AIRCFT_airTemperature_130.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -769,7 +764,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_airTemperature_131.nc4
obsfile: jdiag_AIRCFT_airTemperature_131.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -917,7 +912,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_airTemperature_134.nc4
obsfile: jdiag_AIRCFT_airTemperature_134.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1065,7 +1060,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_airTemperature_135.nc4
obsfile: jdiag_AIRCFT_airTemperature_135.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1213,7 +1208,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_specificHumidity_134.nc4
obsfile: jdiag_AIRCFT_specificHumidity_134.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1373,7 +1368,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_uv_230.nc4
obsfile: jdiag_AIRCFT_uv_230.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1602,7 +1597,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_uv_231.nc4
obsfile: jdiag_AIRCFT_uv_231.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1831,7 +1826,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_uv_234.nc4
obsfile: jdiag_AIRCFT_uv_234.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2060,7 +2055,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_uv_235.nc4
obsfile: jdiag_AIRCFT_uv_235.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2289,7 +2284,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: MSONET_hofxs_airTemperature_188.nc4
obsfile: jdiag_MSONET_airTemperature_188.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2432,7 +2427,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: MSONET_hofxs_specificHumidity_188.nc4
obsfile: jdiag_MSONET_specificHumidity_188.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2576,7 +2571,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: MSONET_hofxs_stationPressure_188.nc4
obsfile: jdiag_MSONET_stationPressure_188.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2717,7 +2712,7 @@ cost function:
obsdataout:
engine:
type: H5File
obsfile: MSONET_hofxs_uv_288.nc4
obsfile: jdiag_MSONET_uv_288.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down
32 changes: 16 additions & 16 deletions rrfs-test/testinput/rrfs_mpasjedi_2024052700_getkf_observer.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCAR_hofxs_airTemperature_133.nc4
obsfile: jdiag_AIRCAR_airTemperature_133.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -184,7 +184,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCAR_hofxs_uv_233.nc4
obsfile: jdiag_AIRCAR_uv_233.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -413,7 +413,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCAR_hofxs_specificHumidity_133.nc4
obsfile: jdiag_AIRCAR_specificHumidity_133.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -573,7 +573,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_airTemperature_130.nc4
obsfile: jdiag_AIRCFT_airTemperature_130.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -721,7 +721,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_airTemperature_131.nc4
obsfile: jdiag_AIRCFT_airTemperature_131.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -869,7 +869,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_airTemperature_134.nc4
obsfile: jdiag_AIRCFT_airTemperature_134.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1017,7 +1017,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_airTemperature_135.nc4
obsfile: jdiag_AIRCFT_airTemperature_135.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1165,7 +1165,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_specificHumidity_134.nc4
obsfile: jdiag_AIRCFT_specificHumidity_134.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1325,7 +1325,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_uv_230.nc4
obsfile: jdiag_AIRCFT_uv_230.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1554,7 +1554,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_uv_231.nc4
obsfile: jdiag_AIRCFT_uv_231.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -1783,7 +1783,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_uv_234.nc4
obsfile: jdiag_AIRCFT_uv_234.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2012,7 +2012,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: AIRCFT_hofxs_uv_235.nc4
obsfile: jdiag_AIRCFT_uv_235.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2241,7 +2241,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: MSONET_hofxs_airTemperature_188.nc4
obsfile: jdiag_MSONET_airTemperature_188.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2384,7 +2384,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: MSONET_hofxs_specificHumidity_188.nc4
obsfile: jdiag_MSONET_specificHumidity_188.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2528,7 +2528,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: MSONET_hofxs_stationPressure_188.nc4
obsfile: jdiag_MSONET_stationPressure_188.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down Expand Up @@ -2669,7 +2669,7 @@ observations:
obsdataout:
engine:
type: H5File
obsfile: MSONET_hofxs_uv_288.nc4
obsfile: jdiag_MSONET_uv_288.nc4
allow overwrite: true
io pool:
max pool size: 1
Expand Down
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