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prevent overwriting processed variables during execute_pp_functions #599

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Jun 27, 2024
Merged

prevent overwriting processed variables during execute_pp_functions #599

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19 changes: 12 additions & 7 deletions src/preprocessor.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1003,7 +1003,8 @@ def execute_pp_functions(self, v: varlist_util.VarlistEntry,
# Call function with the arguments
# user_scripts.example_pp_script.main(xarray_ds, v)
xarray_ds = user_module.main(xarray_ds, v.name)


return xarray_ds
def setup(self, pod):
"""Method to do additional configuration immediately before :meth:`process`
is called on each variable for *pod*. Implements metadata cleaning via
Expand Down Expand Up @@ -1274,12 +1275,16 @@ def process(self,
cat_subset = self.query_catalog(case_list, config.DATA_CATALOG)
for case_name, case_xr_dataset in cat_subset.items():
for v in case_list[case_name].varlist.iter_vars():
cat_subset[case_name] = self.parse_ds(v, case_xr_dataset)
self.execute_pp_functions(v,
cat_subset[case_name],
work_dir=model_work_dir[case_name],
case_name=case_name)

tv_name = v.translation.name #abbreviate
var_xr_dataset = self.parse_ds(v, case_xr_dataset)
cat_subset[case_name]['time'] = var_xr_dataset['time']
cat_subset[case_name].update({tv_name: var_xr_dataset[tv_name]})
pp_func_dataset = self.execute_pp_functions(v,
cat_subset[case_name],
work_dir=model_work_dir[case_name],
case_name=case_name)
cat_subset[case_name].update({tv_name: pp_func_dataset[tv_name]})

return cat_subset

def write_pp_catalog(self,
Expand Down
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