MOM6 run time parameter system

Model run-time parameters

MOM6 has an extensive set of parameters that are set at run-time by parsing an input file. Many parameters have default values and are not required to be in the input file, although there are a number of parameters that must be set for the model to run. The numerous examples provided with the MOM6 code mostly differ in their run-time parameters (although some add other components, like sea-ice), and comparison between these examples is an excellent way to get a broad overview of many of MOM6’s parameters and how they might be set.

Getting parameters into MOM6

Run-time parameters are provided to the model in two phases:

1. A very small set of logistical parameters are read as namelist variables from the FMS parameter file input.nml. One of these logistical parameters is a list of ascii files that contain all the other run-time parameters.
2. All of the above-named parameter files are scanned for MOM6 model parameters, default values assigned and replaced, conflicts detected and various parameter summaries logged to files and/or the standard output.

Namelist parameters (input.nml)

All FMS derived MOM6 parameters reside in the namelist MOM_input_nml in the file input.nml. The parameters are:

• input_filename - If equal to ‘n’ will run a new run (i.e. will not read a restart file). If equal to ‘r’ MOM6 will attempt to read a restart file.
• parameter_filename - A list of file names containing the MOM6 internal run-time parameters. Typically param_files=’MOM6_input’,’MOM6_override’ where the file MOM6_input contains all the non-default parameters that define a “baseline” experiment and MOM6_override will be either empty (for baseline) or contain a few parameters that define a “derived” experiment (that differs from the baseline). This helps keep the parameter lists concise and enables easy comparison of parameters in related experiments.
• restart_input_dir, restart_output_dir, and output_directory - These specify the directories for reading input files, writing restart files, and writing many non-restart files.

Other MOM6-relevant FMS parameters

The namelist ocean_solo_nml may have the integer parameters secs, hours, days, months and years, which dictate how long the FMS ocean driver will try to run the model each run-segment.

MOM6 parameter file syntax

The general syntax for an entry in a MOM6 parameter file is

[!]#[override] PARAMETER_NAME = value[,value][...][!comments]

Parameter names must be constructed from the characters [A-Za-z0-9_] and by soft convention are upper case. The “!” character is a remark or comment indicator; all subsequent text on that line is ignored.

Parameters that are not specified in the parameter files may assume a default value. It is not an error to specify a parameter more than once with the same value. It is an error to specify different values.

The keyword #override indicates that this parameter specification takes precedence over other specifications. It is not an error to have two #override specifications for a single parameter with the same values. It is an error to have two #override statements with different values.

The soon to be deprecated #define keyword causes the parameter to assume the provided value (or in the case of logical parameters to be set to .TRUE.). If the parameter has a default value, the value provided will be assumed and the default value ignored. It is not an error to have two #define statements for a single parameter with the same values. It is an error to have two #define statements with different values.

Some illustrations:

DO_THIS = True	! Set the Boolean to .TRUE.
DO_THAT = False	! Set the Boolean to .FALSE.
NXYZ = 5	! Set the value ot NXYZ to 5
HALF = 0.5	! Set the value of HALF to 0.5
NAME = ‘abc’	! Set the string NAME to ‘abc’
VECTOR = 1.0,2.0	! Set the array VECTOR to [1.0, 2.0] 
NAMES = ‘abc’,’xyz’	! Set the strings NAMES to ‘abc’,’xyz’
#override DO_THIS = False	! Set the Boolean to .FALSE., ignoring the above specification
#override HALF = 0.25	! Set the value of HALF to 0.25, ignoring the above value
#override HALF = 0.25	! Same as the above value of HALF to 0.25 so is accepted

Logging of parameters

The subroutine that reads MOM6 parameters has also serves to log every parameter to a file set by DOCUMENT_FILE, usually “MOM6_parameter_doc”. In addition to the name of the variable being read, these calls contain a brief description, along with a description of the units and the default value (if any) or an indication that there is no default and that the variable must be present. For example, “DT” is always required to be present:

  call get_param(param_file, module, "DT", CS%dt, &
             	"The (baroclinic) dynamics time step.  The time-step that \n"//&
             	"is actually used will be an integer fraction of the \n"//&
             	"forcing time-step (DT_FORCING in ocean-only mode or the \n"//&
             	"coupling timestep in coupled mode.)", units="s", &
             	fail_if_missing=.true.)

At run-time, two levels of logging are performed, depending on the value of the parameter “MINIMAL_DOCUMENTATION”:

• (TRUE) The end result of the combination of default values, assignments and overrides are recorded with default and current values, description and units, for all parameters.
• (FALSE) The minimal list of required and non-default value parameters are recorded with current values, description and units only for those parameters needed to reproduce the configuration.

Either of the generated logging files can be used as inputs and yield the same configuration.

In addition, there are also calls that log derived quantities (e.g., a time-step that is derived from a CFL number, or the full path to an input file) without reading anything in.

Error checking of parameters and parameter files

There are several techniques that are used for error checking on MOM6 parameters:

• Some parameters have internal error messages if they are set to nonsensical values.
• No parameter can be set twice inconsistently without an explicit ‘#override’ specification.
• If the run-time parameter REPORT_UNUSED_PARAMS is true, a warning will be issued for any entries in the input parameter files that are not read in, for instance if they are misspelled.
• Setting the run-time parameter FATAL_UNUSED_PARAMS to true causes a fatal error that will bring down the model if there are any unused entries in the input parameter files.