668 setup repo structure (#2)

* Setup structure using govcookiecutter

* remove duplicate package in dev requirements

* Update setup.cfg author

* Update repo structure:

- Change PR Template
- Create workflows
- Point requirements to MBS repo
- create placeholder unit test for workflows

* Update setup.cfg

* Update setup.cfg

* Update setup.cfg

updating to be same structure as mbs

.env

@@ -0,0 +1,34 @@
+# Environment variables go here, and can be read in by Python using the `python-dotenv`
+# package, and `os.getenv`:
+#
+#   ------------------------------------------------------------------------------------
+#   from dotenv import load_dotenv
+#   import os
+#
+#   # Load the environment variables from the `.env` file, overriding any system
+#   # environment variables
+#   load_dotenv(override=True)
+#
+#   # Load secrets from the `.secrets` file, overriding any system environment variables
+#   load_dotenv(".secrets", override=True)
+#
+#   # Example variable
+#   EXAMPLE_VARIABLE = os.getenv("EXAMPLE_VARIABLE")
+#   ------------------------------------------------------------------------------------
+#
+# For folder/file path environment variables, use relative paths.
+#
+# DO NOT STORE SECRETS HERE - this file is version-controlled! You should store secrets
+# in the untracked `.secrets` file.
+
+# Add environment variables for the `docs` directory
+DIR_DOCS=./docs
+
+# Add environment variable for package directory
+DIR_SRC = ./cons_results
+
+# Add environment variables for the `src` directories
+DIR_SRC_COOKIECUTTER.REPO_NAME.LOWER().REPLACE('','_').REPLACE('-','_') =./cons_results
+
+# Add environment variables for the `tests` directory
+DIR_TESTS=./tests

.envrc

@@ -0,0 +1,23 @@
+# Orchestration file to load environment variables from the `.env` and `.secrets` files.
+#
+# Only used by systems with `direnv` (https://direnv.net/) installed. Environment
+# variables can be read in by Python using `os.getenv` _without_ using `python-dotenv`:
+#
+#   ------------------------------------------------------------------------------------
+#   import os
+#
+#   # Example variable
+#   EXAMPLE_VARIABLE = os.getenv("EXAMPLE_VARIABLE")
+#   ------------------------------------------------------------------------------------
+#
+# DO NOT STORE SECRETS HERE - this file is version-controlled! You should store secrets
+# in the untracked `.secrets` file. This is loaded here using the `dotenv_if_exists`
+# command.
+
+# Add the working directory to `PYTHONPATH`; allows Jupyter notebooks in the
+# `notebooks` folder to import `src`
+export PYTHONPATH="$PYTHONPATH:$(pwd)"
+
+# Load the `.env` file, and `.secrets` (if it exists)
+dotenv .env
+dotenv_if_exists .secrets

.flake8

@@ -0,0 +1,9 @@
+[flake8]
+# Rule definitions: http://flake8.pycqa.org/en/latest/user/error-codes.html
+# D203: 1 blank line required before class docstring
+# W503: line break before binary operator
+exclude = venv*,__pycache__,node_modules,bower_components,migrations
+ignore = D203,W503
+max-complexity = 9
+max-line-length = 88
+extend-ignore = E203

.github/pull_request_template.md

@@ -0,0 +1,62 @@
+# Pull Request Title
+
+<!--
+Please provide a descriptive title for the pull request.
+-->
+
+# Summary
+
+Add your summary here - keep it brief, to the point, and in plain English.
+
+# Type of Change
+
+<!--
+Please select the type of change that applies to this pull request.
+-->
+
+- [ ] Bug fix
+- [ ] New feature
+- [ ] Breaking change
+- [ ] Documentation update
+- [ ] Other (please describe):
+
+
+# Checklists
+
+<!--
+These are do-confirm checklists; it confirms that you have done each item.
+
+If actions are irrelevant, please add a comment stating why.
+
+Incomplete pull/merge requests may be blocked until actions are resolved, or closed at
+the reviewers' discretion.
+-->
+
+This pull request meets the following requirements:
+
+## Creator Checklist
+
+- [ ] Installable with all dependencies recorded
+- [ ] Runs without error
+- [ ] Follows PEP8 and project-specific conventions
+- [ ] Appropriate use of comments, for example, no descriptive comments
+- [ ] Functions documented using Numpy style docstrings
+- [ ] Assumptions and decisions log considered and updated if appropriate
+- [ ] Unit tests have been updated to cover essential functionality for a reasonable range of inputs and conditions
+- [ ] Other forms of testing such as end-to-end and user-interface testing have been considered and updated as required
+
+If you feel some of these conditions do not apply for this pull request, please
+add a comment to explain why.
+
+## Reviewer Checklist
+
+- [ ] Test suite passes (locally as a minimum)
+- [ ] Peer reviewed with review recorded
+
+# Additional Information
+
+Please provide any additional information or context that would help the reviewer understand the changes in this pull request.
+
+# Related Issues
+
+Link any related issues or pull requests here.

.github/workflows/main.yaml

@@ -0,0 +1,48 @@
+name: cml_runtimes
+
+on:
+  # Triggers the workflow on pull requests to main branch
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  commit-hooks:
+    runs-on: ubuntu-20.04
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: actions/setup-python@v3
+        with:
+          python-version: 3.10.13
+
+      - name: Install Python dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -e .[dev]
+
+      - name: Check commit hooks
+        run: |
+          pre-commit run --all-files
+
+  testing-cml:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        cml_version: ["3.8", "3.9", "3.10","3.11"]
+    steps:
+    - name: checkout ml-runtimes  #https://github.com/cloudera/ml-runtimes
+      uses: actions/checkout@master
+      with:
+        repository: cloudera/ml-runtimes
+    - name: build runtime cml_${{matrix.cml_version}}
+      run: docker build -t cml:${{matrix.cml_version}} -f 'pbj-workbench-python${{matrix.cml_version}}-standard.Dockerfile' .
+    - name: checkout to repository
+      uses: actions/checkout@v3
+    - name: create container
+      run:  docker run -id --name container_${{matrix.cml_version}} -v"$(pwd)"://home/cdsw cml:${{matrix.cml_version}}
+    - name: build in dev mode
+      run: docker exec container_${{matrix.cml_version}}  pip install ."[dev]"
+    - name: check env
+      run: docker exec container_${{matrix.cml_version}} pip list
+    - name: test
+      run: docker exec container_${{matrix.cml_version}} pytest