[ci skip] Autodoc commit for c21ce4ec7b7a95aa768a81a6bddc038337e7c513.

latest/_sources/issues/overview.rst.txt

@@ -175,8 +175,10 @@ Workarounds: At the time of writing the current version of Safari is version 12.
 RStudio and Upgrading Singularity 3 to minor version 5
 ------------------------------------------------------
 
-OnDemand RStudio implmentations using Singularity may break when upgrading to Singularity version 3.5 or above. There is an undocumented breaking change where ``LD_LIBRARY_PATH`` is no longer exported to the container by default. Instead the container will default to having ``LD_LIBRARY_PATH=/.singularity.d/libs``. Explicitly exporting the variable by using ``SINGULARITYENV_LD_LIBRARY_PATH="$LD_LIBRARY_PATH" singularity ...`` appears sufficient to fix the issue.
+OnDemand RStudio implementations using Singularity may break when upgrading to Singularity version 3.5 or above. There is an undocumented breaking change where ``LD_LIBRARY_PATH`` is no longer exported to the container by default. Instead the container will default to having ``LD_LIBRARY_PATH=/.singularity.d/libs``. 
+
+Workarounds: Explicitly exporting the variable by using ``SINGULARITYENV_LD_LIBRARY_PATH="$LD_LIBRARY_PATH" singularity ...`` appears sufficient to fix the issue.
 
 .. _Cyberduck: https://cyberduck.io
 .. _FileZilla: https://filezilla-project.org/
-.. _Globus Connect Personal: https://www.globus.org/globus-connect-personal
+.. _Globus Connect Personal: https://www.globus.org/globus-connect-personal

latest/issues/overview.html

@@ -324,7 +324,8 @@ <h2>Paste does not work in older versions of Safari<a class="headerlink" href="#
 </div>
 <div class="section" id="rstudio-and-upgrading-singularity-3-to-minor-version-5">
 <h2>RStudio and Upgrading Singularity 3 to minor version 5<a class="headerlink" href="#rstudio-and-upgrading-singularity-3-to-minor-version-5" title="Permalink to this headline">¶</a></h2>
-<p>OnDemand RStudio implmentations using Singularity may break when upgrading to Singularity version 3.5 or above. There is an undocumented breaking change where <code class="docutils literal notranslate"><span class="pre">LD_LIBRARY_PATH</span></code> is no longer exported to the container by default. Instead the container will default to having <code class="docutils literal notranslate"><span class="pre">LD_LIBRARY_PATH=/.singularity.d/libs</span></code>. Explicitly exporting the variable by using <code class="docutils literal notranslate"><span class="pre">SINGULARITYENV_LD_LIBRARY_PATH=&quot;$LD_LIBRARY_PATH&quot;</span> <span class="pre">singularity</span> <span class="pre">...</span></code> appears sufficient to fix the issue.</p>
+<p>OnDemand RStudio implementations using Singularity may break when upgrading to Singularity version 3.5 or above. There is an undocumented breaking change where <code class="docutils literal notranslate"><span class="pre">LD_LIBRARY_PATH</span></code> is no longer exported to the container by default. Instead the container will default to having <code class="docutils literal notranslate"><span class="pre">LD_LIBRARY_PATH=/.singularity.d/libs</span></code>.</p>
+<p>Workarounds: Explicitly exporting the variable by using <code class="docutils literal notranslate"><span class="pre">SINGULARITYENV_LD_LIBRARY_PATH=&quot;$LD_LIBRARY_PATH&quot;</span> <span class="pre">singularity</span> <span class="pre">...</span></code> appears sufficient to fix the issue.</p>
 </div>
 </div>