Make handling of base units more robust #184
Workflow file for this run
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name: Pull-Request | |
on: | |
pull_request: | |
branches: [devel, main] | |
jobs: | |
build: | |
name: build (${{ matrix.python-version }}, ${{ matrix.platform.name }}) | |
runs-on: ${{ matrix.platform.os }} | |
strategy: | |
max-parallel: 9 | |
fail-fast: false | |
matrix: | |
python-version: ["3.9", "3.10", "3.11"] | |
platform: | |
- { name: "windows", os: "windows-latest", shell: "pwsh" } | |
- { name: "linux", os: "ubuntu-latest", shell: "bash -l {0}" } | |
- { name: "macos", os: "macos-latest", shell: "bash -l {0}" } | |
exclude: | |
# Exclude all but the latest Python from all | |
# but Linux | |
- platform: | |
{ name: "macos", os: "macos-latest", shell: "bash -l {0}" } | |
python-version: "3.9" | |
- platform: { name: "windows", os: "windows-latest", shell: "pwsh" } | |
python-version: "3.9" | |
- platform: | |
{ name: "macos", os: "macos-latest", shell: "bash -l {0}" } | |
python-version: "3.10" | |
- platform: { name: "windows", os: "windows-latest", shell: "pwsh" } | |
python-version: "3.10" | |
environment: | |
name: biosimspace-build | |
defaults: | |
run: | |
shell: ${{ matrix.platform.shell }} | |
env: | |
SIRE_DONT_PHONEHOME: 1 | |
SIRE_SILENT_PHONEHOME: 1 | |
REPO: "${{ github.event.pull_request.head.repo.full_name || github.repository }}" | |
steps: | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
python-version: ${{ matrix.python-version }} | |
activate-environment: bss_build | |
miniforge-version: latest | |
miniforge-variant: Mambaforge | |
use-mamba: true | |
# | |
- name: Clone the feature branch | |
run: git clone -b ${{ github.head_ref }} --single-branch https://github.com/${{ env.REPO }} biosimspace | |
# | |
- name: Setup Conda | |
run: mamba install -y -c conda-forge boa anaconda-client packaging=21 pip-requirements-parser | |
# | |
- name: Update Conda recipe | |
run: python ${{ github.workspace }}/biosimspace/actions/update_recipe.py | |
# | |
- name: Prepare build location | |
run: mkdir ${{ github.workspace }}/build | |
# | |
- name: Build Conda package using mamba build using main channel | |
if: ${{ github.base_ref == 'main' }} | |
run: conda mambabuild -c conda-forge -c openbiosim/label/main ${{ github.workspace }}/biosimspace/recipes/biosimspace | |
# | |
- name: Build Conda package using mamba build using dev channel | |
if: ${{ github.base_ref != 'main' }} | |
run: conda mambabuild -c conda-forge -c openbiosim/label/dev ${{ github.workspace }}/biosimspace/recipes/biosimspace |