[DOC] Added Mathematical Notation & few changes #178
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Chemical Struct of L-alarine was added for a reference wrt to SMILES.
Rendering of math equation was not proper
Telomelonia
changed the title
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thanks for your contribution! we will look into it |
tapaswenipathak
approved these changes
Jan 15, 2023
jpfeuffer
requested changes
Feb 16, 2023
| @@ -1263,7 +1272,7 @@ false IDs by separating target IDs from decoy IDs. | |||
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| ROC curves illustrate the discriminative capability of the scores of IDs. In the case of protein identifications, Fido produces the posterior probability of each protein as | |||
| the output score. However, a perfect score should not only be highly discriminative (distinguishing true from false IDs), it should also be “calibrated” (for probability indicating that all IDs with reported posterior probability scores of 95% should roughly have a 5% probability of being false. This implies that the estimated number of false | |||
| positives can be computed as the sum of posterior error probabilities ( = 1 - posterior probability) in a set, divided by the number of proteins in the set. Thereby a | |||
| positives can be computed as the sum of posterior error probabilities = (1 - posterior probability) in a set, divided by the number of proteins in the set. Thereby a | |||
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I liked the other notation better.
| @@ -22,7 +22,7 @@ FASTA format | |||
| A text-based format for representing nucleotide or amino acid sequences. | |||
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| octadecyl (C18) | |||
| An alkyl radical C(18)H(37) derived from an octadecane by removal of one hydrogen atom. | |||
| An alkyl radical :math:`C_{18}H_{37}` derived from an octadecane by removal of one hydrogen atom. | |||
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Do you have a screenshot of this? From my experience, this will treat C and H as mathematical variables, which is not what we want.
Better to use :sub: for subscripts.
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Yes, just tested and it is not correct.
Please use :sub: for stoichiometric coefficients and :sup: for isotopes instead.
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Describe the change
resolves #136
These changes are just from tutorials.
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CHANGELOG.mdis updated.