Skip to content
CI

2.0.0 release #1182

Sign in to view logs

2.0.0 release

2.0.0 release #1182

Triggered via pull request October 14, 2024 10:21
@nebfieldnebfield
synchronize #382
integrate-utils-1.4.1
Status Cancelled
Total duration 4h 27m 2s
Artifacts 10

ci.yml

on: pull_request
preload_docker  /  docker
2m 15s
preload_docker / docker
preload_singularity  /  singularity
44s
preload_singularity / singularity
preload_ancestry  /  preload_reference
6s
preload_ancestry / preload_reference
Matrix: pytest_workflow_docker
Matrix: standard_test_docker / docker
Matrix: standard_test_docker / singularity
Matrix: pytest_workflow_singularity
Matrix: standard_test_singularity / docker
Matrix: standard_test_singularity / singularity
ancestry_docker  /  docker
8m 7s
ancestry_docker / docker
ancestry_docker  /  singularity
0s
ancestry_docker / singularity
ancestry_vcf_docker  /  docker
8m 34s
ancestry_vcf_docker / docker
ancestry_vcf_docker  /  singularity
0s
ancestry_vcf_docker / singularity
ancestry_singularity  /  docker
0s
ancestry_singularity / docker
ancestry_singularity  /  singularity
47s
ancestry_singularity / singularity
ancestry_vcf_singularity  /  docker
0s
ancestry_vcf_singularity / docker
ancestry_vcf_singularity  /  singularity
4h 25m
ancestry_vcf_singularity / singularity
Fit to window
Zoom out
Zoom in

Annotations

43 errors
standard_test_singularity / singularity (test, singularity, 23.10.0)
Process completed with exit code 1.
standard_test_singularity / singularity (test, singularity, latest)
Process completed with exit code 1.
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testsmallscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test combine scorefiles module) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testrelabelpvar) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test match combine module) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testrelabelbim) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testrelabelbim) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
The operation was canceled.
pytest_workflow_singularity (test perfect apply score) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test perfect apply score) / singularity
The operation was canceled.
ancestry_singularity / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test input check subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 vcf) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 vcf) / singularity
The operation was canceled.
pytest_workflow_singularity (test match module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match module) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testscore) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testmultiscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testmultiscore) / singularity
The operation was canceled.
pytest_workflow_singularity (test apply score subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test apply score subworkflow) / singularity
The operation was canceled.
ancestry_vcf_singularity / singularity
The run was canceled by @nebfield.
ancestry_vcf_singularity / singularity
The operation was canceled.

Artifacts

Produced during runtime
Name Size
logs-singularity-ancestry
2.82 KB
logs-singularity-pgscatalog test --efo_trait --pgp_id and --pgs_id
1.48 KB
logs-singularity-pgscatalog test --pgs_id
1.32 KB
logs-singularity-plink2 testrelabelpvar
589 KB
logs-singularity-plink2 testsmallmultiscore
340 KB
logs-singularity-plink2 testsmallscore
340 KB
logs-singularity-test combine scorefiles module
1.4 KB
logs-singularity-test input check subworkflow with PGS catalog API
1.84 KB
logs-singularity-test input check subworkflow with PGS catalog API and whitespace
1.92 KB
logs-singularity-test match combine module
353 KB