Merge pull request #189 from PTB-M4D/fix/#147_rewrite_inverse_methods…

…_of_model_estimation

Rewrite inverse methods of model estimation

docs/Deconvolution by FIR.rst

@@ -20,7 +20,7 @@ Design of a digital deconvolution filter (FIR type)
 
 .. code:: python
 
-    from PyDynamic.model_estimation.fit_filter import invLSFIR_unc
+    from PyDynamic.model_estimation.fit_filter import LSFIR
     from PyDynamic.misc.SecondOrderSystem import *
     from PyDynamic.misc.testsignals import shocklikeGaussian
     from PyDynamic.misc.filterstuff import kaiser_lowpass, db
@@ -193,7 +193,7 @@ Filter coefficients and associated uncertainties are thus obtained as
 
     # Calculation of FIR deconvolution filter and its assoc. unc.
     N = 12; tau = N//2
-    bF, UbF = invLSFIR_unc(H,UH,N,tau,f,Fs)
+    bF, UbF = LSFIR(H,N,tau,f,Fs,UH=UH)
 
 
 .. parsed-literal::
@@ -297,8 +297,8 @@ Fit an FIR filter to the reciprocal of the measured frequency response
 
 .. code:: python
 
-    from PyDynamic.model_estimation.fit_filter import invLSFIR_unc
-    bF, UbF = invLSFIR_unc(H,UH,N,tau,f,Fs, verbose=False)
+    from PyDynamic.model_estimation.fit_filter import LSFIR
+    bF, UbF = LSFIR(H,N,tau,f,Fs,verbose=False,UH=UH)
 
 with
 

docs/PyDynamic.uncertainty.rst

@@ -54,5 +54,5 @@ Monte Carlo methods for digital filtering
 Uncertainty evaluation for interpolation
 ----------------------------------------
 
-.. automodule:: PyDynamic.uncertainty.interpolation
+.. automodule:: PyDynamic.uncertainty.interpolate
     :members:

docs/conf.py

@@ -138,9 +138,6 @@
 # If true, keep warnings as "system message" paragraphs in the built documents.
 # keep_warnings = False
 
-# If true, `todo` and `todoList` produce output, else they produce nothing.
-todo_include_todos = True
-
 
 # -- Options for HTML output ----------------------------------------------
 

requirements/dev-requirements-py36.txt

@@ -6,7 +6,7 @@
 #
 alabaster==0.7.12
     # via sphinx
-astroid==2.7.3
+astroid==2.8.2
     # via pylint
 async-generator==1.10
     # via nbclient
@@ -19,19 +19,19 @@ babel==2.9.1
     # via sphinx
 backports.entry-points-selectable==1.1.0
     # via virtualenv
-black==21.8b0
+black==21.9b0
     # via -r requirements/dev-requirements.in
 bleach==4.1.0
     # via
     #   nbconvert
     #   readme-renderer
-certifi==2021.5.30
+certifi==2021.10.8
     # via requests
-cffi==1.14.6
+cffi==1.15.0
     # via cryptography
-charset-normalizer==2.0.4
+charset-normalizer==2.0.7
     # via requests
-click==8.0.1
+click==8.0.3
     # via
     #   black
     #   click-log
@@ -42,19 +42,19 @@ colorama==0.4.4
     # via twine
 commonmark==0.9.1
     # via recommonmark
-coverage==5.5
+coverage[toml]==6.0.2
     # via pytest-cov
-cryptography==3.4.8
+cryptography==35.0.0
     # via secretstorage
 dataclasses==0.8
     # via black
 decorator==5.1.0
     # via traitlets
 defusedxml==0.7.1
     # via nbconvert
-distlib==0.3.2
+distlib==0.3.3
     # via virtualenv
-docutils==0.16
+docutils==0.17.1
     # via
     #   nbsphinx
     #   readme-renderer
@@ -67,17 +67,17 @@ entrypoints==0.3
     # via
     #   jupyter-client
     #   nbconvert
-filelock==3.0.12
+filelock==3.3.1
     # via
     #   tox
     #   virtualenv
 gitdb==4.0.7
     # via gitpython
 gitpython==3.1.18
     # via python-semantic-release
-hypothesis==6.21.0
+hypothesis==6.23.2
     # via -r requirements/dev-requirements.in
-idna==3.2
+idna==3.3
     # via requests
 imagesize==1.2.0
     # via sphinx
@@ -108,16 +108,16 @@ jeepney==0.7.1
     # via
     #   keyring
     #   secretstorage
-jinja2==3.0.1
+jinja2==3.0.2
     # via
     #   nbconvert
     #   nbsphinx
     #   sphinx
 jsonschema==3.2.0
     # via nbformat
-jupyter-client==7.0.2
+jupyter-client==7.0.6
     # via nbclient
-jupyter-core==4.7.1
+jupyter-core==4.8.1
     # via
     #   jupyter-client
     #   nbconvert
@@ -158,13 +158,13 @@ packaging==21.0
     #   setuptools-scm
     #   sphinx
     #   tox
-pandocfilters==1.4.3
+pandocfilters==1.5.0
     # via nbconvert
 pathspec==0.9.0
     # via black
 pkginfo==1.7.1
     # via twine
-platformdirs==2.3.0
+platformdirs==2.4.0
     # via
     #   black
     #   pylint
@@ -185,7 +185,7 @@ pygments==2.10.0
     #   nbconvert
     #   readme-renderer
     #   sphinx
-pylint==2.10.2
+pylint==2.11.1
     # via -r requirements/dev-requirements.in
 pyparsing==2.4.7
     # via
@@ -197,7 +197,7 @@ pytest==6.2.5
     # via
     #   -r requirements/dev-requirements.in
     #   pytest-cov
-pytest-cov==2.12.1
+pytest-cov==3.0.0
     # via -r requirements/dev-requirements.in
 python-dateutil==2.8.2
     # via
@@ -207,17 +207,17 @@ python-gitlab==2.10.1
     # via python-semantic-release
 python-semantic-release==7.19.2
     # via -r requirements/dev-requirements.in
-pytz==2021.1
+pytz==2021.3
     # via
     #   -c requirements/requirements-py36.txt
     #   babel
-pyzmq==22.2.1
+pyzmq==22.3.0
     # via jupyter-client
-readme-renderer==29.0
+readme-renderer==30.0
     # via twine
 recommonmark==0.7.1
     # via -r requirements/dev-requirements.in
-regex==2021.8.28
+regex==2021.10.8
     # via black
 requests==2.26.0
     # via
@@ -232,7 +232,7 @@ requests-toolbelt==0.9.1
     #   twine
 rfc3986==1.5.0
     # via twine
-rope==0.19.0
+rope==0.20.1
     # via -r requirements/dev-requirements.in
 secretstorage==3.3.1
     # via keyring
@@ -246,7 +246,6 @@ six==1.16.0
     #   bleach
     #   jsonschema
     #   python-dateutil
-    #   readme-renderer
     #   tox
     #   traitlets
     #   virtualenv
@@ -262,7 +261,7 @@ sphinx==4.2.0
     #   nbsphinx
     #   recommonmark
     #   sphinx-rtd-theme
-sphinx-rtd-theme==0.5.2
+sphinx-rtd-theme==1.0.0
     # via -r requirements/dev-requirements.in
 sphinxcontrib-applehelp==1.0.2
     # via sphinx
@@ -282,19 +281,19 @@ toml==0.10.2
     # via
     #   pylint
     #   pytest
-    #   pytest-cov
     #   tox
 tomli==1.2.1
     # via
     #   black
+    #   coverage
     #   setuptools-scm
 tomlkit==0.7.0
     # via python-semantic-release
 tornado==6.1
     # via jupyter-client
-tox==3.24.3
+tox==3.24.4
     # via -r requirements/dev-requirements.in
-tqdm==4.62.2
+tqdm==4.62.3
     # via twine
 traitlets==4.3.3
     # via
@@ -316,17 +315,18 @@ typing-extensions==3.10.0.2
     #   black
     #   gitpython
     #   importlib-metadata
-urllib3==1.26.6
+    #   pylint
+urllib3==1.26.7
     # via requests
-virtualenv==20.7.2
+virtualenv==20.8.1
     # via tox
 webencodings==0.5.1
     # via bleach
 wheel==0.37.0
     # via python-semantic-release
 wrapt==1.12.1
     # via astroid
-zipp==3.5.0
+zipp==3.6.0
     # via
     #   importlib-metadata
     #   importlib-resources