-
Notifications
You must be signed in to change notification settings - Fork 8
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
d406e8f
commit 38fcb57
Showing
1 changed file
with
20 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,20 @@ | ||
# syntax=docker/dockerfile:1 | ||
|
||
|
||
FROM python:3.7.12-slim-buster | ||
|
||
|
||
RUN apt-get update && apt-get -y install gcc && apt-get -y install g++ \ | ||
&& apt-get -y install wget && apt-get -y install autoconf && apt-get -y install automake && apt-get -y install libxml2-dev && \ | ||
wget https://github.com/Kitware/CMake/releases/download/v3.22.3/cmake-3.22.3-linux-x86_64.sh && \ | ||
cp cmake-3.22.3-linux-x86_64.sh /opt/ && chmod +x /opt/cmake-3.22.3-linux-x86_64.sh && \ | ||
cd /opt/ &&yes y | bash /opt/cmake-3.22.3-linux-x86_64.sh && ln -s /opt/cmake-3.22.3-linux-x86_64/bin/* /usr/local/bin && \ | ||
apt-get install -y git | ||
|
||
RUN pip3 install click matplotlib pandas anndata sklearn | ||
|
||
RUN git clone https://github.com/YY-SONG0718/sccaf && cd sccaf && pip3 install . | ||
|
||
RUN pip3 install scanpy==1.9.1 | ||
|
||
ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin |