Merge pull request #85 from PredictiveEcology/LandRAssertionFix #159
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| - development | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - development | |
| paths: | |
| - .github/workflows/render-module-rmd.yaml | |
| - Biomass_core.Rmd | |
| - Biomass_core.R | |
| name: Render module Rmd | |
| jobs: | |
| render: | |
| if: "!contains(github.event.commits[0].message, '[skip-ci]')" | |
| name: Render module Rmd | |
| runs-on: ubuntu-20.04 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| Ncpus: 2 | |
| - name: Install additional system dependencies | |
| run: | | |
| sudo apt-get install -y \ | |
| libcurl4-openssl-dev \ | |
| libgdal-dev \ | |
| libgeos-dev \ | |
| libgit2-dev \ | |
| libglpk-dev \ | |
| libmagick++-dev \ | |
| libproj-dev \ | |
| libudunits2-dev \ | |
| libxml2-dev \ | |
| python3-gdal | |
| - uses: PredictiveEcology/actions/install-Require@v0 | |
| with: | |
| GitTag: '5c44205bf407f613f53546be652a438ef1248147' | |
| - uses: PredictiveEcology/actions/install-SpaDES@v0 | |
| - uses: PredictiveEcology/actions/install-Rmd-pkgs@v0 | |
| - name: Install additional packages | |
| run: | | |
| options(repos = c(CRAN = "https://packagemanager.rstudio.com/all/__linux__/focal/latest", CRAN = "https://cran.rstudio.com")) | |
| Require::Require(c("PredictiveEcology/LandR@development"), require = FALSE) | |
| shell: Rscript {0} | |
| - name: Render module Rmd | |
| run: | | |
| rmarkdown::render("Biomass_core.Rmd", encoding = "UTF-8") | |
| shell: Rscript {0} | |
| - name: Commit results | |
| run: | | |
| git config user.email "[email protected]" | |
| git config user.name "GitHub Actions" | |
| git commit Biomass_core.html -m 'Re-build Biomass_core.Rmd' || echo "No changes to commit" | |
| git push https://${{github.actor}}:${{secrets.GITHUB_TOKEN}}@github.com/${{github.repository}}.git HEAD:${{github.ref}} || echo "No changes to commit" |